Variant report

Variant	rs948968
Chromosome Location	chr11:76884122-76884123
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:76877108..76882328-chr11:76882354..76886286,6	K562	blood:
2	chr11:76877108..76882092-chr11:76882914..76884987,4	K562	blood:
3	chr11:76877684..76879888-chr11:76882658..76885632,2	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10793239	0.87[CEU][hapmap]
rs10899356	0.84[CEU][hapmap]
rs1109162	0.83[CEU][hapmap]
rs12577334	0.88[CEU][hapmap]
rs2076968	0.83[CEU][hapmap]
rs2077198	0.84[CEU][hapmap]
rs2276287	0.83[CEU][hapmap]
rs3740762	0.84[CEU][hapmap]
rs3781694	0.83[CEU][hapmap]
rs3781695	0.83[CEU][hapmap]
rs4945155	0.83[CEU][hapmap]
rs7122023	0.84[CEU][hapmap]
rs948970	0.83[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1816632	chr11:76751285-76927014	Enhancers Bivalent Enhancer Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76869400-76889200	Weak transcription	Pancreas	Pancrea
2	chr11:76879000-76884200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr11:76879200-76884200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr11:76880200-76887600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr11:76880400-76916600	Weak transcription	Right Atrium	heart
6	chr11:76881200-76885600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr11:76881200-76885800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr11:76881200-76888000	Enhancers	H1 Cell Line	embryonic stem cell
9	chr11:76881600-76884200	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr11:76881600-76884400	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr11:76881600-76885200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr11:76882000-76885400	Genic enhancers	Fetal Intestine Small	intestine
13	chr11:76882000-76885800	Enhancers	Liver	Liver
14	chr11:76882200-76886000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr11:76882400-76886800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr11:76882400-76888000	Enhancers	Fetal Muscle Leg	muscle
17	chr11:76882600-76885400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr11:76882600-76886200	Enhancers	Adipose Nuclei	Adipose
19	chr11:76882800-76885200	Genic enhancers	Fetal Intestine Large	intestine
20	chr11:76882800-76885200	Enhancers	Fetal Stomach	stomach
21	chr11:76882800-76886000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
22	chr11:76882800-76887600	Enhancers	Spleen	Spleen
23	chr11:76883200-76884600	Enhancers	Stomach Smooth Muscle	stomach
24	chr11:76883200-76885600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr11:76883200-76889200	Weak transcription	Gastric	stomach
26	chr11:76883400-76884200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
27	chr11:76883400-76884400	Enhancers	ES-I3 Cell Line	embryonic stem cell
28	chr11:76883400-76884600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr11:76883400-76887800	Enhancers	HUES6 Cell Line	embryonic stem cell
30	chr11:76883400-76889800	Weak transcription	Ovary	ovary
31	chr11:76883600-76884800	Weak transcription	HUES48 Cell Line	embryonic stem cell
32	chr11:76883600-76885000	Enhancers	Primary hematopoietic stem cells	blood
33	chr11:76883600-76885200	Enhancers	HUVEC	blood vessel
34	chr11:76883600-76885400	Weak transcription	H9 Cell Line	embryonic stem cell
35	chr11:76883600-76885400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
36	chr11:76883600-76886600	Weak transcription	HUES64 Cell Line	embryonic stem cell
37	chr11:76883800-76884200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr11:76883800-76884200	Enhancers	HepG2	liver
39	chr11:76883800-76884600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
40	chr11:76883800-76884800	Weak transcription	Brain Hippocampus Middle	brain
41	chr11:76883800-76885000	Flanking Active TSS	Placenta	Placenta
42	chr11:76883800-76886000	Enhancers	Lung	lung
43	chr11:76883800-76887600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr11:76883800-76898400	Weak transcription	Colonic Mucosa	Colon
45	chr11:76884000-76885000	Weak transcription	Cortex derived primary cultured neurospheres	brain
46	chr11:76884000-76886600	Enhancers	Fetal Muscle Trunk	muscle
47	chr11:76884000-76886800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr11:76884000-76888200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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