Variant report

Variant	rs9489683
Chromosome Location	chr6:119635698-119635699
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:119628759..119633610-chr6:119634034..119636665,6	MCF-7	breast:
2	chr6:119445963..119447697-chr6:119635647..119638116,2	K562	blood:
3	chr6:119511695..119514297-chr6:119634255..119636425,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs28535458	0.86[AFR][1000 genomes]
rs9481907	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs9481908	0.86[AFR][1000 genomes]
rs9489687	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025995	chr6:119407742-119709548	Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv1017507	chr6:119465981-119664949	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	esv3447598	chr6:119558591-120119384	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	esv3389526	chr6:119558598-120190087	ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119617200-119637400	Weak transcription	Aorta	Aorta
2	chr6:119625200-119668600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:119627200-119636800	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr6:119627800-119667000	Weak transcription	Gastric	stomach
5	chr6:119628000-119635800	Weak transcription	Stomach Smooth Muscle	stomach
6	chr6:119629200-119637000	Enhancers	Adipose Nuclei	Adipose
7	chr6:119630400-119637800	Genic enhancers	HepG2	liver
8	chr6:119630800-119636600	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr6:119631600-119636400	Enhancers	Left Ventricle	heart
10	chr6:119631600-119637800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
11	chr6:119631800-119636000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:119631800-119636000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr6:119632000-119636600	Enhancers	Brain Anterior Caudate	brain
14	chr6:119632000-119638400	Weak transcription	Fetal Kidney	kidney
15	chr6:119632200-119636000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr6:119632200-119636200	Enhancers	Right Ventricle	heart
17	chr6:119632200-119638400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr6:119632600-119635800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr6:119632800-119636200	Enhancers	Right Atrium	heart
20	chr6:119632800-119647200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr6:119633000-119635800	Weak transcription	NHDF-Ad	bronchial
22	chr6:119633000-119637400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr6:119633000-119647200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr6:119633200-119637400	Enhancers	Primary B cells from cord blood	blood
25	chr6:119633200-119637400	Enhancers	Fetal Thymus	thymus
26	chr6:119633400-119636200	Flanking Active TSS	K562	blood
27	chr6:119633600-119635800	Enhancers	Fetal Intestine Small	intestine
28	chr6:119633600-119636200	Enhancers	Placenta	Placenta
29	chr6:119633600-119636200	Enhancers	Spleen	Spleen
30	chr6:119633600-119637800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
31	chr6:119633800-119636200	Enhancers	Fetal Muscle Leg	muscle
32	chr6:119633800-119636200	Enhancers	Lung	lung
33	chr6:119633800-119636600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
34	chr6:119633800-119636600	Enhancers	Liver	Liver
35	chr6:119633800-119637200	Enhancers	Primary B cells from peripheral blood	blood
36	chr6:119633800-119637400	Enhancers	Primary T helper cells fromperipheralblood	blood
37	chr6:119634000-119636000	Enhancers	Skeletal Muscle Female	skeletal muscle
38	chr6:119634000-119636200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr6:119634000-119636400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
40	chr6:119634000-119637000	Flanking Active TSS	GM12878-XiMat	blood
41	chr6:119634000-119637400	Enhancers	Fetal Heart	heart
42	chr6:119634000-119637600	Enhancers	Primary hematopoietic stem cells short term culture	blood
43	chr6:119634200-119635800	Weak transcription	Colonic Mucosa	Colon
44	chr6:119634200-119635800	Weak transcription	Skeletal Muscle Male	skeletal muscle
45	chr6:119634200-119647800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr6:119634400-119637000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
47	chr6:119634400-119638400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
48	chr6:119634400-119644000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr6:119634600-119635800	Weak transcription	Duodenum Smooth Muscle	Duodenum
50	chr6:119634600-119635800	Weak transcription	Pancreas	Pancrea

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