Variant report

Variant	rs9489764
Chromosome Location	chr6:119989103-119989104
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:119948119..119949628-chr6:119987885..119989459,2	K562	blood:
2	chr19:7548018..7548521-chr6:119989005..119989505,2	NB4	blood:

Variant related genes	Relation type
ENSG00000104883	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11962855	1.00[ASN][1000 genomes]
rs11965272	1.00[ASN][1000 genomes]
rs11970208	1.00[ASN][1000 genomes]
rs1341498	1.00[EUR][1000 genomes]
rs1341499	1.00[EUR][1000 genomes]
rs17081381	1.00[EUR][1000 genomes]
rs17081384	1.00[TSI][hapmap]
rs17081519	1.00[EUR][1000 genomes]
rs17081528	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56182614	1.00[ASN][1000 genomes]
rs56804496	1.00[EUR][1000 genomes]
rs57207471	0.91[AMR][1000 genomes]
rs59365507	1.00[EUR][1000 genomes]
rs60410454	1.00[ASN][1000 genomes]
rs61427082	1.00[EUR][1000 genomes]
rs62418972	1.00[ASN][1000 genomes]
rs62418973	1.00[ASN][1000 genomes]
rs62419004	1.00[ASN][1000 genomes]
rs62419008	1.00[ASN][1000 genomes]
rs62419009	1.00[ASN][1000 genomes]
rs62419010	1.00[ASN][1000 genomes]
rs62419013	1.00[ASN][1000 genomes]
rs62419016	1.00[ASN][1000 genomes]
rs62419018	1.00[ASN][1000 genomes]
rs6908018	1.00[ASN][1000 genomes]
rs6920735	1.00[ASN][1000 genomes]
rs6924774	0.90[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73533109	1.00[EUR][1000 genomes]
rs73535206	1.00[EUR][1000 genomes]
rs73535225	1.00[EUR][1000 genomes]
rs7739487	1.00[EUR][1000 genomes]
rs9489722	1.00[EUR][1000 genomes]
rs9489756	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9489762	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9489763	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9489789	1.00[MEX][hapmap];1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3447598	chr6:119558591-120119384	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	esv3389526	chr6:119558598-120190087	ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv1027904	chr6:119709488-120001986	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv533518	chr6:119712186-119998618	ZNF genes & repeats Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	esv3442553	chr6:119742069-120076777	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv1027370	chr6:119869409-120056608	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv538431	chr6:119869409-120056608	Weak transcription Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119989000-119991000	Enhancers	Dnd41	blood
2	chr6:119989000-119991400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr6:119989000-119991800	Enhancers	Primary hematopoietic stem cells short term culture	blood

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