Variant report

Variant	rs9490132
Chromosome Location	chr6:121507495-121507496
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:121477367..121479870-chr6:121507284..121508935,2	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10499104	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.83[ASN][1000 genomes]
rs6914273	0.83[ASN][1000 genomes]
rs7749466	1.00[YRI][hapmap]
rs9320790	1.00[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9482131	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs9490120	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9490121	1.00[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9490152	0.80[ASN][1000 genomes]
rs9490154	0.83[YRI][hapmap]
rs9490155	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023384	chr6:121235867-121683448	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv530527	chr6:121298528-121789855	ZNF genes & repeats Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv604572	chr6:121465011-121544876	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121474600-121508600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:121475600-121508600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr6:121478800-121535400	Weak transcription	Brain Cingulate Gyrus	brain
4	chr6:121480200-121535600	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr6:121480800-121535400	Weak transcription	Fetal Intestine Large	intestine
6	chr6:121481000-121535400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr6:121487400-121556000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr6:121494600-121516600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr6:121495200-121529400	Weak transcription	Primary B cells from cord blood	blood
10	chr6:121496400-121516600	Weak transcription	Fetal Muscle Trunk	muscle
11	chr6:121496800-121535400	Weak transcription	Fetal Lung	lung
12	chr6:121498000-121518000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr6:121498600-121535400	Weak transcription	Pancreas	Pancrea
14	chr6:121499000-121516000	Weak transcription	Aorta	Aorta
15	chr6:121499200-121509000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr6:121499800-121535800	Weak transcription	Primary T helper cells PMA-I stimulated	--
17	chr6:121500000-121529000	Weak transcription	Primary T helper cells fromperipheralblood	blood
18	chr6:121500200-121513800	Weak transcription	Ovary	ovary
19	chr6:121502600-121529000	Weak transcription	Left Ventricle	heart
20	chr6:121502800-121521200	Weak transcription	Primary B cells from peripheral blood	blood
21	chr6:121503000-121516800	Weak transcription	Primary T cells from cord blood	blood
22	chr6:121503000-121520600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr6:121503200-121513600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr6:121503200-121517000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr6:121503200-121517600	Weak transcription	Dnd41	blood
26	chr6:121503800-121514400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
27	chr6:121507000-121507600	Enhancers	Placenta	Placenta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links