Variant report

Variant	rs9490180
Chromosome Location	chr6:121661069-121661070
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:121654494..121658196-chr6:121658584..121663246,8	K562	blood:
2	chr6:121653058..121658241-chr6:121659261..121663570,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000146350	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs17083247	1.00[AMR][1000 genomes]
rs17083364	1.00[AMR][1000 genomes]
rs17083423	1.00[AMR][1000 genomes]
rs6569198	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6569199	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6905024	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6909602	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6918861	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6924917	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6929839	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6941053	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9482132	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9482133	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9482134	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9482135	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9482136	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9482138	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9482140	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9482141	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9482142	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9490166	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9490168	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9490169	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9490171	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9490172	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9490174	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9490175	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9490176	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9490178	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9490179	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023384	chr6:121235867-121683448	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv530527	chr6:121298528-121789855	ZNF genes & repeats Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv830789	chr6:121581450-121732320	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121656200-121662000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:121657200-121661200	Weak transcription	Brain Anterior Caudate	brain
3	chr6:121659600-121661200	Enhancers	Fetal Stomach	stomach
4	chr6:121660600-121661600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr6:121660800-121661400	Enhancers	Fetal Kidney	kidney
6	chr6:121660800-121661400	Enhancers	K562	blood

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