Variant report

Variant	rs9490309
Chromosome Location	chr6:121822155-121822156
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10214457	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28661806	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73767037	1.00[AFR][1000 genomes]
rs9482168	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9482170	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9490282	1.00[AMR][1000 genomes]
rs9490295	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9490303	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9490311	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5458	chr6:121787521-121823054	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121807400-121824400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr6:121813000-121824200	Weak transcription	Hela-S3	cervix
3	chr6:121813200-121828000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr6:121817200-121825400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr6:121820000-121828000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr6:121820400-121824400	Weak transcription	NH-A	brain
7	chr6:121820600-121823800	Weak transcription	A549	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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