Variant report

Variant	rs949052
Chromosome Location	chr11:119883641-119883642
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr11:119883609-119884524	SK-N-SH	brain:	n/a	chr11:119884123-119884136
2	RAD21	chr11:119883537-119884533	SK-N-SH	brain:	n/a	n/a
3	CTCF	chr11:119883560-119883830	HAc	cerebellar:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:119536835..119537469-chr11:119883617..119884436,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000255216	TF binding region

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs12419224	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054057	chr11:119781953-120519770	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv541178	chr11:119781953-120519770	Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv832285	chr11:119789595-119957724	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1037777	chr11:119842515-119898368	Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv541179	chr11:119842515-119898368	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv524406	chr11:119873404-119893179	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	esv2762948	chr11:119876596-119901422	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119879600-119889200	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr11:119880200-119885000	Enhancers	Esophagus	oesophagus
3	chr11:119880400-119884200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr11:119880800-119883800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr11:119880800-119884800	Enhancers	Brain Substantia Nigra	brain
6	chr11:119881200-119884600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr11:119881400-119884400	Enhancers	Brain Hippocampus Middle	brain
8	chr11:119881600-119885800	Enhancers	Brain Inferior Temporal Lobe	brain
9	chr11:119881800-119884000	Enhancers	Brain Anterior Caudate	brain
10	chr11:119881800-119884000	Weak transcription	Fetal Thymus	thymus
11	chr11:119881800-119884800	Enhancers	Brain Germinal Matrix	brain
12	chr11:119881800-119890000	Enhancers	Brain Cingulate Gyrus	brain
13	chr11:119882000-119885400	Bivalent Enhancer	Fetal Muscle Leg	muscle
14	chr11:119882200-119885000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
15	chr11:119882600-119884600	Enhancers	Brain Angular Gyrus	brain
16	chr11:119883200-119884800	Enhancers	Right Ventricle	heart
17	chr11:119883200-119885000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr11:119883200-119885200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
19	chr11:119883200-119893400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr11:119883400-119884600	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell

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