Variant report

Variant	rs9491552
Chromosome Location	chr6:126292822-126292823
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:126277054..126279317-chr6:126290498..126293083,2	K562	blood:
2	chr6:126289673..126293923-chr6:126305502..126309195,6	K562	blood:
3	chr6:126290729..126293306-chr6:126307165..126309168,2	K562	blood:
4	chr6:126291171..126292854-chr6:126294277..126296394,2	K562	blood:
5	chr6:126277281..126281347-chr6:126291607..126295652,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000066651	Chromatin interaction
ENSG00000111911	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs56144043	0.87[AFR][1000 genomes]
rs73773351	0.87[AFR][1000 genomes]
rs9491555	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830796	chr6:126165633-126336168	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1019490	chr6:126248596-126542296	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv1022677	chr6:126256752-126516305	Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv886636	chr6:126278230-126383476	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:126278600-126295400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:126278800-126302000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr6:126279000-126306800	Weak transcription	Colonic Mucosa	Colon
4	chr6:126279200-126304600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr6:126279400-126293400	Weak transcription	HSMMtube	muscle
6	chr6:126279400-126295800	Weak transcription	HSMM	muscle
7	chr6:126279400-126304400	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr6:126279600-126293000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr6:126279600-126303800	Weak transcription	NHLF	lung
10	chr6:126279600-126304000	Weak transcription	NH-A	brain
11	chr6:126279600-126306400	Weak transcription	HMEC	breast
12	chr6:126279600-126306800	Weak transcription	HUVEC	blood vessel
13	chr6:126279800-126296000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr6:126279800-126296200	Weak transcription	NHDF-Ad	bronchial
15	chr6:126279800-126304000	Weak transcription	Osteobl	bone
16	chr6:126279800-126304400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr6:126279800-126306800	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr6:126280000-126304600	Weak transcription	NHEK	skin
19	chr6:126280000-126306600	Weak transcription	Rectal Smooth Muscle	rectum
20	chr6:126280000-126307400	Weak transcription	Spleen	Spleen
21	chr6:126280200-126294600	Weak transcription	Fetal Lung	lung
22	chr6:126280200-126306600	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr6:126280200-126307200	Weak transcription	Aorta	Aorta
24	chr6:126280200-126307200	Weak transcription	Small Intestine	intestine
25	chr6:126280400-126306600	Weak transcription	Psoas Muscle	Psoas
26	chr6:126280400-126306800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr6:126280600-126298800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
28	chr6:126280800-126306600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
29	chr6:126281000-126296200	Weak transcription	Brain Germinal Matrix	brain
30	chr6:126281000-126304200	Weak transcription	Hela-S3	cervix
31	chr6:126281000-126305600	Weak transcription	GM12878-XiMat	blood
32	chr6:126281000-126306800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
33	chr6:126281000-126306800	Weak transcription	Colon Smooth Muscle	Colon
34	chr6:126281000-126307000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
35	chr6:126281000-126307000	Weak transcription	Fetal Brain Male	brain
36	chr6:126281400-126304600	Weak transcription	HUES48 Cell Line	embryonic stem cell
37	chr6:126281400-126306800	Weak transcription	Fetal Brain Female	brain
38	chr6:126281400-126307200	Weak transcription	Pancreas	Pancrea
39	chr6:126282800-126293400	Weak transcription	Ovary	ovary
40	chr6:126283000-126306600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
41	chr6:126283000-126306800	Weak transcription	Right Ventricle	heart
42	chr6:126283200-126293200	Weak transcription	Fetal Intestine Small	intestine
43	chr6:126283200-126307000	Weak transcription	Fetal Stomach	stomach
44	chr6:126285000-126306800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
45	chr6:126285400-126300000	Weak transcription	Stomach Mucosa	stomach
46	chr6:126285600-126295200	Weak transcription	A549	lung
47	chr6:126285600-126296200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
48	chr6:126286400-126293200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr6:126286400-126294600	Weak transcription	Brain Anterior Caudate	brain
50	chr6:126287600-126304200	Strong transcription	Monocytes-CD14+_RO01746	blood

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