Variant report

Variant	rs9491569
Chromosome Location	chr6:126494678-126494679
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1856443	1.00[AMR][1000 genomes]
rs34929677	1.00[AMR][1000 genomes]
rs57539450	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019490	chr6:126248596-126542296	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv1022677	chr6:126256752-126516305	Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv1015834	chr6:126376458-126634409	Weak transcription Enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv3395170	chr6:126423618-126590175	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:126472800-126499400	Weak transcription	Pancreas	Pancrea
2	chr6:126478400-126495000	Weak transcription	HepG2	liver
3	chr6:126478400-126538800	Weak transcription	Ovary	ovary
4	chr6:126488400-126499600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr6:126489000-126499400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr6:126491800-126501400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr6:126492200-126501600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr6:126492600-126502600	Weak transcription	Stomach Mucosa	stomach
9	chr6:126492800-126502600	Weak transcription	GM12878-XiMat	blood
10	chr6:126493600-126494800	Weak transcription	Fetal Kidney	kidney
11	chr6:126494400-126495000	Enhancers	Fetal Stomach	stomach
12	chr6:126494600-126494800	Enhancers	Fetal Intestine Large	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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