Variant report

Variant	rs9492700
Chromosome Location	chr6:131033027-131033028
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs17059493	1.00[AMR][1000 genomes]
rs73772391	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9321250	1.00[AMR][1000 genomes]
rs9483176	1.00[AMR][1000 genomes]
rs9492713	1.00[AMR][1000 genomes]
rs9492714	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533971	chr6:130490694-131172051	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv830806	chr6:130938330-131107137	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv604664	chr6:131004998-131115817	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131029600-131034200	Weak transcription	Fetal Kidney	kidney
2	chr6:131029800-131034200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr6:131029800-131034600	Weak transcription	Fetal Stomach	stomach
4	chr6:131029800-131035000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr6:131030000-131037200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr6:131032000-131035600	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr6:131032200-131034200	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr6:131032200-131035400	Enhancers	H9 Cell Line	embryonic stem cell
9	chr6:131032200-131035800	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr6:131032400-131034200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr6:131032400-131034200	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr6:131032400-131034200	Weak transcription	Fetal Brain Male	brain
13	chr6:131032400-131035200	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr6:131032600-131033600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr6:131032600-131034200	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr6:131032800-131033600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr6:131032800-131035200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr6:131032800-131035400	Enhancers	iPS-15b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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