Variant report

Variant	rs9493039
Chromosome Location	chr6:131982418-131982419
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10081029	1.00[AMR][1000 genomes]
rs9483309	1.00[AMR][1000 genomes]
rs9483313	1.00[AMR][1000 genomes]
rs9483314	1.00[AMR][1000 genomes]
rs9483315	1.00[AMR][1000 genomes]
rs9483322	1.00[AMR][1000 genomes]
rs9493029	1.00[AMR][1000 genomes]
rs9493054	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv515476	chr6:131615425-132228577	Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv7968	chr6:131917172-132321099	Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv830809	chr6:131953928-132126417	Bivalent Enhancer Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
4	nsv830810	chr6:131960923-132138396	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131949800-131983200	Weak transcription	Aorta	Aorta
2	chr6:131974400-131992400	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr6:131975200-132008200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr6:131976000-131996600	Weak transcription	Fetal Intestine Large	intestine
5	chr6:131976200-131996800	Weak transcription	Fetal Intestine Small	intestine
6	chr6:131977000-131988000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr6:131977000-131997000	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr6:131978600-131985400	Strong transcription	HepG2	liver
9	chr6:131981800-131992400	Weak transcription	K562	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links