Variant report

Variant	rs9493102
Chromosome Location	chr6:132116704-132116705
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs17053505	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28464156	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28805702	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3844009	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3850253	0.89[ASN][1000 genomes]
rs3850254	0.89[ASN][1000 genomes]
rs55856021	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56275339	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62424767	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6931816	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7749523	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7752279	0.84[ASN][1000 genomes]
rs7757394	0.89[ASN][1000 genomes]
rs9483343	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9493099	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:28 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv515476	chr6:131615425-132228577	Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv7968	chr6:131917172-132321099	Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv830809	chr6:131953928-132126417	Bivalent Enhancer Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
4	nsv830810	chr6:131960923-132138396	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
5	nsv886670	chr6:132071193-132193395	Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
6	nsv886671	chr6:132071193-132203432	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
7	nsv5479	chr6:132101897-132136593	Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
8	esv21004	chr6:132106620-132118530	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
9	esv2621656	chr6:132112828-132119747	Enhancers Weak transcription Flanking Active TSS	TF binding region miRNA	1 gene(s)	inside rSNPs	n/a
10	esv3507844	chr6:132113059-132119657	Enhancers Weak transcription Flanking Active TSS	TF binding region miRNA	1 gene(s)	inside rSNPs	n/a
11	esv2503027	chr6:132113387-132118982	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
12	esv3507843	chr6:132113559-132119532	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
13	esv988486	chr6:132113744-132119290	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
14	esv1972520	chr6:132114040-132118740	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
15	esv3507845	chr6:132114043-132118821	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
16	esv3473369	chr6:132114078-132118656	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
17	esv3507846	chr6:132114109-132118642	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
18	esv3507847	chr6:132114119-132118663	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
19	esv3473368	chr6:132114135-132118628	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
20	esv3507849	chr6:132114136-132118594	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
21	esv3473367	chr6:132114139-132118620	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
22	esv999284	chr6:132114160-132118605	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
23	esv3507848	chr6:132114164-132118609	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
24	nsv499719	chr6:132114228-132118549	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
25	esv3473370	chr6:132114229-132118551	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
26	esv3507850	chr6:132114229-132118551	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
27	esv1008341	chr6:132114885-132118432	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
28	esv19692	chr6:132114969-132118530	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132116400-132117000	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr6:132116400-132117000	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr6:132116400-132117200	Enhancers	iPS-15b Cell Line	embryonic stem cell

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