Variant report

Variant	rs9493116
Chromosome Location	chr6:132200633-132200634
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:132199766..132202360-chr6:132202864..132205975,3	MCF-7	breast:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1044498	1.00[CHB][hapmap];0.94[CHD][hapmap];0.82[JPT][hapmap]
rs11154645	0.92[ASN][1000 genomes]
rs4141767	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs4897548	0.84[ASN][1000 genomes]
rs6569761	1.00[CHB][hapmap];0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs6916495	0.85[GIH][hapmap]
rs6919751	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs6926728	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs6926970	1.00[CHB][hapmap];0.88[CHD][hapmap];0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs7749493	1.00[CHB][hapmap];0.94[CHD][hapmap];0.82[JPT][hapmap]
rs7767502	1.00[CHB][hapmap];0.94[CHD][hapmap];0.82[JPT][hapmap]
rs7769712	0.81[ASW][hapmap];1.00[CEU][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9493113	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv515476	chr6:131615425-132228577	Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv7968	chr6:131917172-132321099	Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv886671	chr6:132071193-132203432	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132162200-132211000	Weak transcription	Fetal Kidney	kidney
2	chr6:132163000-132213600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:132170600-132201800	Weak transcription	Left Ventricle	heart
4	chr6:132170800-132211200	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr6:132171200-132209400	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr6:132180600-132213200	Strong transcription	Liver	Liver
7	chr6:132182000-132214200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr6:132184400-132209400	Weak transcription	Stomach Smooth Muscle	stomach
9	chr6:132184800-132213200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr6:132185200-132217200	Weak transcription	Psoas Muscle	Psoas
11	chr6:132185600-132201600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr6:132185600-132201800	Weak transcription	Fetal Intestine Large	intestine
13	chr6:132185800-132201000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr6:132185800-132212600	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr6:132186200-132213800	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr6:132186600-132212400	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr6:132188200-132201000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr6:132190000-132210000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr6:132190000-132211400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr6:132190000-132213200	Strong transcription	HepG2	liver
21	chr6:132190200-132214000	Weak transcription	NHDF-Ad	bronchial
22	chr6:132190600-132216200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr6:132192200-132202000	Weak transcription	Gastric	stomach
24	chr6:132192200-132213800	Weak transcription	Pancreas	Pancrea
25	chr6:132192800-132202800	Strong transcription	HUES6 Cell Line	embryonic stem cell
26	chr6:132194000-132202200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
27	chr6:132194600-132201200	Weak transcription	Fetal Muscle Leg	muscle
28	chr6:132195200-132212800	Strong transcription	HUES64 Cell Line	embryonic stem cell
29	chr6:132195600-132202400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
30	chr6:132196000-132202200	Strong transcription	HUES48 Cell Line	embryonic stem cell
31	chr6:132196600-132202200	Strong transcription	Placenta Amnion	Placenta Amnion
32	chr6:132196800-132202200	Strong transcription	H9 Cell Line	embryonic stem cell
33	chr6:132196800-132211000	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr6:132197400-132207600	Weak transcription	NH-A	brain
35	chr6:132197600-132201000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr6:132197800-132206000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
37	chr6:132198000-132202800	Strong transcription	Osteobl	bone
38	chr6:132198200-132202200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr6:132198200-132202200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr6:132198200-132202200	Strong transcription	Placenta	Placenta
41	chr6:132198600-132201800	Weak transcription	Adipose Nuclei	Adipose
42	chr6:132199400-132202800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr6:132199400-132209200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr6:132199600-132201000	Weak transcription	H1 Cell Line	embryonic stem cell
45	chr6:132199600-132201200	Weak transcription	Fetal Stomach	stomach
46	chr6:132199600-132201400	Weak transcription	Fetal Intestine Small	intestine
47	chr6:132199600-132201800	Weak transcription	Aorta	Aorta
48	chr6:132199600-132201800	Weak transcription	Ovary	ovary
49	chr6:132199600-132202000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
50	chr6:132199800-132201000	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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