Variant report

Variant	rs9493430
Chromosome Location	chr6:133077240-133077241
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs45553436	0.85[AMR][1000 genomes]
rs45574635	0.85[AMR][1000 genomes]
rs6569831	0.87[AMR][1000 genomes]
rs6569834	1.00[MEX][hapmap]
rs6569838	0.89[ASW][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.87[AMR][1000 genomes]
rs6917978	0.87[AMR][1000 genomes]
rs6918343	0.87[AMR][1000 genomes]
rs767147	0.89[ASW][hapmap];1.00[MEX][hapmap];0.87[AMR][1000 genomes]
rs9321362	0.87[AMR][1000 genomes]
rs9493431	0.89[ASW][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.81[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1015742	chr6:132933666-133285852	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133061400-133098000	Weak transcription	Spleen	Spleen
2	chr6:133064200-133083000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr6:133064800-133078000	Strong transcription	Primary T cells from cord blood	blood
4	chr6:133065000-133098000	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr6:133068800-133083200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr6:133069600-133083200	Weak transcription	Thymus	Thymus
7	chr6:133070800-133077600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr6:133070800-133078800	Weak transcription	Placenta	Placenta
9	chr6:133070800-133079000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr6:133072200-133079000	Strong transcription	Primary T cells fromperipheralblood	blood
11	chr6:133072800-133082000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr6:133072800-133084400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr6:133072800-133084800	Weak transcription	Stomach Mucosa	stomach
14	chr6:133073000-133080000	Strong transcription	Primary T helper cells fromperipheralblood	blood
15	chr6:133073200-133083200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr6:133073400-133078600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr6:133073600-133077400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr6:133073800-133077400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr6:133073800-133077400	Weak transcription	GM12878-XiMat	blood
20	chr6:133075200-133078600	Active TSS	Primary hematopoietic stem cells	blood
21	chr6:133075400-133078800	Active TSS	Primary B cells from cord blood	blood
22	chr6:133075800-133083600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr6:133076600-133079000	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
24	chr6:133076800-133077400	Weak transcription	Primary B cells from peripheral blood	blood
25	chr6:133076800-133078600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr6:133076800-133078800	Strong transcription	Primary T helper cells PMA-I stimulated	--
27	chr6:133076800-133079600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
28	chr6:133077200-133077400	Active TSS	Primary neutrophils fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links