Variant report

Variant	rs9493753
Chromosome Location	chr6:134205338-134205339
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs17063055	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2327425	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3734280	0.94[ASN][1000 genomes]
rs55896993	0.87[EUR][1000 genomes]
rs57764276	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73774162	0.87[EUR][1000 genomes]
rs9483623	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9483625	1.00[EUR][1000 genomes]
rs9493748	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9493749	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9493750	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9493752	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9493762	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34122	chr6:134089019-134378252	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134198600-134206400	Weak transcription	Fetal Lung	lung
2	chr6:134200600-134206200	Weak transcription	Fetal Stomach	stomach
3	chr6:134204400-134206400	Weak transcription	Ovary	ovary
4	chr6:134205200-134205800	Enhancers	Fetal Kidney	kidney

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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