Variant report

Variant	rs9493844
Chromosome Location	chr6:134467724-134467725
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs9385678	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9389146	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9483658	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492292	chr6:134464255-135028540	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134460200-134468400	Weak transcription	HSMMtube	muscle
2	chr6:134466400-134467800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr6:134466400-134468000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr6:134466600-134467800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr6:134466600-134467800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr6:134466600-134468000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr6:134466600-134468000	Enhancers	Osteobl	bone
8	chr6:134466600-134468200	Enhancers	Muscle Satellite Cultured Cells	--
9	chr6:134466800-134467800	Enhancers	NHDF-Ad	bronchial
10	chr6:134466800-134468400	Enhancers	Hela-S3	cervix
11	chr6:134467000-134467800	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr6:134467000-134467800	Enhancers	Adipose Nuclei	Adipose
13	chr6:134467000-134467800	Enhancers	Fetal Muscle Leg	muscle
14	chr6:134467000-134468000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr6:134467000-134468000	Enhancers	K562	blood
16	chr6:134467200-134467800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr6:134467400-134467800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr6:134467400-134468000	Enhancers	Cortex derived primary cultured neurospheres	brain
19	chr6:134467600-134467800	Enhancers	Ovary	ovary

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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