Variant report

Variant	rs9495554
Chromosome Location	chr6:139964451-139964452
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs55771622	1.00[AMR][1000 genomes]
rs60089334	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6899947	1.00[AMR][1000 genomes]
rs73554035	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73554049	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73775568	1.00[AMR][1000 genomes]
rs9495553	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9495555	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv516840	chr6:139960833-140053704	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:139957200-139976000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr6:139958600-139965200	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr6:139958800-139967200	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr6:139959800-139965200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr6:139960000-139965000	Weak transcription	Fetal Intestine Small	intestine
6	chr6:139962000-139965000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr6:139962200-139965600	Weak transcription	HSMM	muscle
8	chr6:139962200-139969200	Enhancers	K562	blood
9	chr6:139962400-139965000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr6:139962400-139965600	Weak transcription	HSMMtube	muscle
11	chr6:139962400-139967200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr6:139962600-139966200	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr6:139963000-139964800	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr6:139963000-139966200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr6:139963400-139965000	Enhancers	Monocytes-CD14+_RO01746	blood
16	chr6:139963400-139967200	Enhancers	Fetal Heart	heart
17	chr6:139963600-139969200	Weak transcription	Primary hematopoietic stem cells	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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