Variant report

Variant	rs9495580
Chromosome Location	chr6:140070792-140070793
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:140069467..140071933-chr6:140072771..140075457,2	MCF-7	breast:
2	chr6:139695575..139697248-chr6:140068689..140071855,3	MCF-7	breast:
3	chr6:139694011..139696064-chr6:140069948..140072058,2	K562	blood:

Variant related genes	Relation type
ENSG00000164442	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs17069288	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3015436	0.93[JPT][hapmap]
rs56310140	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6916734	0.86[EUR][1000 genomes]
rs9484315	0.86[EUR][1000 genomes]
rs9495544	1.00[YRI][hapmap]
rs9495581	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv464065	chr6:140027836-140085873	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv604766	chr6:140027836-140085873	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv830820	chr6:140059279-140255292	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9495580	ADAT2	cis	cerebellum	SCAN

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140054800-140072000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr6:140065400-140071800	Weak transcription	HepG2	liver
3	chr6:140066000-140073400	Weak transcription	HSMM	muscle
4	chr6:140066200-140072800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr6:140066400-140072200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr6:140066400-140074800	Weak transcription	A549	lung
7	chr6:140066600-140071800	Weak transcription	NHDF-Ad	bronchial
8	chr6:140066800-140073400	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr6:140068200-140070800	Enhancers	Placenta Amnion	Placenta Amnion
10	chr6:140069000-140071000	Enhancers	Fetal Heart	heart
11	chr6:140069200-140075800	Weak transcription	Pancreas	Pancrea
12	chr6:140070000-140071800	Weak transcription	Fetal Intestine Large	intestine
13	chr6:140070000-140072200	Weak transcription	NH-A	brain
14	chr6:140070000-140073400	Weak transcription	NHLF	lung
15	chr6:140070200-140071800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr6:140070200-140071800	Weak transcription	Osteobl	bone
17	chr6:140070200-140072200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr6:140070200-140072200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr6:140070200-140072200	Weak transcription	Fetal Kidney	kidney
20	chr6:140070200-140072400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr6:140070200-140073600	Weak transcription	HSMMtube	muscle
22	chr6:140070200-140074600	Weak transcription	Liver	Liver
23	chr6:140070200-140074600	Weak transcription	Fetal Lung	lung
24	chr6:140070200-140075800	Weak transcription	Ovary	ovary
25	chr6:140070200-140075800	Weak transcription	Right Atrium	heart
26	chr6:140070200-140076000	Weak transcription	Placenta	Placenta
27	chr6:140070200-140076000	Weak transcription	Hela-S3	cervix
28	chr6:140070200-140085200	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr6:140070400-140072000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr6:140070400-140072200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr6:140070400-140074800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr6:140070400-140075800	Weak transcription	Adipose Nuclei	Adipose
33	chr6:140070600-140071600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr6:140070600-140075800	Weak transcription	Fetal Intestine Small	intestine
35	chr6:140070600-140076000	Weak transcription	Duodenum Mucosa	Duodenum

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