Variant report

Variant	rs9495658
Chromosome Location	chr6:140526383-140526384
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12181874	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9484348	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9484350	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv1016532	chr6:140174639-141029988	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
3	nsv886693	chr6:140444057-140578494	Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	esv1825718	chr6:140476088-140584384	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
5	nsv5503	chr6:140511360-140556183	Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140525000-140526400	Enhancers	HSMM	muscle
2	chr6:140525000-140529200	Weak transcription	Adipose Nuclei	Adipose
3	chr6:140525200-140529000	Weak transcription	Fetal Heart	heart
4	chr6:140525600-140526800	Weak transcription	Right Ventricle	heart
5	chr6:140525600-140527000	Weak transcription	Fetal Lung	lung
6	chr6:140525600-140529000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr6:140525600-140529200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr6:140525600-140529200	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr6:140525600-140529200	Weak transcription	NHLF	lung
10	chr6:140525600-140529400	Weak transcription	HUVEC	blood vessel
11	chr6:140525600-140529600	Weak transcription	HSMMtube	muscle
12	chr6:140525800-140526800	Weak transcription	Stomach Smooth Muscle	stomach
13	chr6:140525800-140526800	Weak transcription	NHDF-Ad	bronchial
14	chr6:140525800-140529200	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr6:140526000-140529000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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