Variant report

Variant	rs9496460
Chromosome Location	chr6:143085799-143085800
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs2328375	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3888723	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6570528	1.00[AMR][1000 genomes]
rs73586535	1.00[AMR][1000 genomes]
rs9484670	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9496461	0.86[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949088	chr6:142561402-143128849	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv830828	chr6:142970134-143116517	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv830829	chr6:143058408-143218077	Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143072800-143094800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr6:143072800-143095200	Strong transcription	Fetal Thymus	thymus
3	chr6:143072800-143095400	Weak transcription	Fetal Kidney	kidney
4	chr6:143073000-143090800	Weak transcription	Right Atrium	heart
5	chr6:143073000-143096000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr6:143073600-143086400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr6:143074000-143086600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr6:143074000-143086800	Strong transcription	Adipose Nuclei	Adipose
9	chr6:143074000-143094000	Strong transcription	Primary T cells fromperipheralblood	blood
10	chr6:143074800-143095800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr6:143075000-143091000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr6:143078200-143096200	Strong transcription	Primary hematopoietic stem cells	blood
13	chr6:143081400-143090800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr6:143081400-143091200	Weak transcription	Right Ventricle	heart
15	chr6:143081600-143086600	Weak transcription	Primary monocytes fromperipheralblood	blood
16	chr6:143081600-143091000	Weak transcription	Gastric	stomach
17	chr6:143081600-143095400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr6:143081600-143095600	Weak transcription	Stomach Mucosa	stomach
19	chr6:143081800-143090000	Weak transcription	Fetal Muscle Leg	muscle
20	chr6:143081800-143090200	Weak transcription	Fetal Intestine Small	intestine
21	chr6:143081800-143090200	Weak transcription	Lung	lung
22	chr6:143081800-143090800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr6:143081800-143090800	Weak transcription	Brain Hippocampus Middle	brain
24	chr6:143081800-143090800	Weak transcription	Esophagus	oesophagus
25	chr6:143081800-143090800	Weak transcription	Fetal Stomach	stomach
26	chr6:143081800-143090800	Weak transcription	Pancreas	Pancrea
27	chr6:143081800-143090800	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr6:143081800-143090800	Weak transcription	Spleen	Spleen
29	chr6:143081800-143091000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr6:143081800-143091200	Weak transcription	Aorta	Aorta
31	chr6:143081800-143091400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
32	chr6:143081800-143092000	Weak transcription	Brain Angular Gyrus	brain
33	chr6:143081800-143093600	Weak transcription	H1 Cell Line	embryonic stem cell
34	chr6:143081800-143094000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
35	chr6:143081800-143095200	Weak transcription	Colonic Mucosa	Colon
36	chr6:143081800-143095800	Weak transcription	H9 Cell Line	embryonic stem cell
37	chr6:143081800-143097000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr6:143081800-143105600	Weak transcription	Small Intestine	intestine
39	chr6:143082000-143088200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
40	chr6:143082000-143090400	Weak transcription	Colon Smooth Muscle	Colon
41	chr6:143082000-143090800	Weak transcription	Stomach Smooth Muscle	stomach
42	chr6:143082000-143091800	Weak transcription	Fetal Lung	lung
43	chr6:143082000-143092000	Weak transcription	Brain Substantia Nigra	brain
44	chr6:143082000-143092600	Weak transcription	Brain Cingulate Gyrus	brain
45	chr6:143082000-143092800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
46	chr6:143082000-143096200	Weak transcription	A549	lung
47	chr6:143082200-143087200	Weak transcription	Primary B cells from cord blood	blood
48	chr6:143082200-143088200	Weak transcription	Dnd41	blood
49	chr6:143082200-143089200	Weak transcription	Fetal Intestine Large	intestine
50	chr6:143082200-143090000	Weak transcription	HUES6 Cell Line	embryonic stem cell

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