Variant report

Variant	rs9496752
Chromosome Location	chr6:144036462-144036463
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs9321943	0.85[YRI][hapmap]
rs9496753	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758084	chr6:143916621-144079976	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2759476	chr6:143916621-144079976	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144011600-144053200	Weak transcription	Hela-S3	cervix
2	chr6:144014200-144039800	Weak transcription	Pancreas	Pancrea
3	chr6:144016200-144037200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr6:144016200-144038000	Weak transcription	NHEK	skin
5	chr6:144017000-144038200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr6:144017200-144044200	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr6:144017800-144047200	Weak transcription	K562	blood
8	chr6:144018200-144044400	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr6:144021800-144037800	Weak transcription	Right Atrium	heart
10	chr6:144022200-144052600	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr6:144022200-144063200	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr6:144022800-144052800	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr6:144022800-144057200	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr6:144022800-144064200	Weak transcription	NH-A	brain
15	chr6:144023000-144046200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr6:144023200-144039400	Weak transcription	HUVEC	blood vessel
17	chr6:144023200-144043800	Weak transcription	Fetal Kidney	kidney
18	chr6:144023200-144045800	Weak transcription	NHLF	lung
19	chr6:144023400-144039400	Weak transcription	Stomach Smooth Muscle	stomach
20	chr6:144023800-144048600	Weak transcription	Psoas Muscle	Psoas
21	chr6:144023800-144063600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr6:144024600-144052800	Weak transcription	Osteobl	bone
23	chr6:144025400-144039400	Weak transcription	Ovary	ovary
24	chr6:144025400-144048000	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr6:144027200-144037800	Weak transcription	HepG2	liver
26	chr6:144027600-144052600	Weak transcription	Duodenum Mucosa	Duodenum
27	chr6:144027800-144046400	Weak transcription	Gastric	stomach
28	chr6:144027800-144056000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr6:144028000-144041400	Weak transcription	Liver	Liver
30	chr6:144028000-144054600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr6:144028200-144052800	Weak transcription	Stomach Mucosa	stomach
32	chr6:144028600-144038000	Weak transcription	Small Intestine	intestine
33	chr6:144029600-144047800	Weak transcription	NHDF-Ad	bronchial
34	chr6:144030800-144037600	Weak transcription	Primary neutrophils fromperipheralblood	blood
35	chr6:144030800-144038600	Weak transcription	Pancreatic Islets	Pancreatic Islet
36	chr6:144030800-144039400	Weak transcription	Adipose Nuclei	Adipose
37	chr6:144030800-144043800	Weak transcription	Fetal Heart	heart
38	chr6:144031000-144038200	Weak transcription	Aorta	Aorta
39	chr6:144031000-144039600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
40	chr6:144031000-144041600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr6:144031000-144054600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr6:144031000-144062200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr6:144031200-144037200	Weak transcription	Lung	lung
44	chr6:144031200-144044400	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr6:144031400-144037600	Weak transcription	Right Ventricle	heart
46	chr6:144031400-144041200	Weak transcription	Primary monocytes fromperipheralblood	blood
47	chr6:144031400-144044600	Weak transcription	Primary hematopoietic stem cells	blood
48	chr6:144031400-144054000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
49	chr6:144031600-144047800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr6:144031800-144044400	Weak transcription	Primary T cells from cord blood	blood

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