Variant report

Variant	rs9496805
Chromosome Location	chr6:144222930-144222931
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs2092716	1.00[CHB][hapmap]
rs7742707	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3408554	chr6:144106707-144369589	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	esv3522138	chr6:144174685-144367463	Enhancers Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv3522139	chr6:144174685-144367463	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv830830	chr6:144177942-144380870	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9496805	LTV1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144186000-144223000	Weak transcription	Primary B cells from peripheral blood	blood
2	chr6:144218400-144224000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr6:144219200-144234200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr6:144221200-144239200	Weak transcription	Primary B cells from cord blood	blood
5	chr6:144222000-144225000	Enhancers	Fetal Lung	lung
6	chr6:144222200-144225000	Enhancers	Fetal Muscle Leg	muscle
7	chr6:144222400-144225000	Enhancers	Ovary	ovary
8	chr6:144222600-144223800	Enhancers	Fetal Intestine Small	intestine
9	chr6:144222600-144224600	Enhancers	Fetal Stomach	stomach
10	chr6:144222800-144223000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr6:144222800-144223000	Enhancers	Primary hematopoietic stem cells	blood
12	chr6:144222800-144223000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr6:144222800-144223000	Enhancers	Brain Substantia Nigra	brain
14	chr6:144222800-144223000	Flanking Active TSS	Stomach Smooth Muscle	stomach
15	chr6:144222800-144223000	Enhancers	HSMMtube	muscle
16	chr6:144222800-144223400	Enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr6:144222800-144223400	Enhancers	Small Intestine	intestine
18	chr6:144222800-144223800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr6:144222800-144223800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr6:144222800-144223800	Enhancers	Aorta	Aorta
21	chr6:144222800-144223800	Enhancers	Brain Anterior Caudate	brain
22	chr6:144222800-144223800	Enhancers	Rectal Smooth Muscle	rectum
23	chr6:144222800-144224000	Weak transcription	Fetal Muscle Trunk	muscle
24	chr6:144222800-144224200	Enhancers	Brain Hippocampus Middle	brain
25	chr6:144222800-144224200	Enhancers	Colon Smooth Muscle	Colon
26	chr6:144222800-144224200	Enhancers	Duodenum Smooth Muscle	Duodenum
27	chr6:144222800-144224200	Flanking Active TSS	GM12878-XiMat	blood
28	chr6:144222800-144224400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr6:144222800-144224400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr6:144222800-144224400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr6:144222800-144224400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr6:144222800-144224400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
33	chr6:144222800-144224400	Enhancers	Fetal Kidney	kidney
34	chr6:144222800-144224400	Enhancers	Placenta	Placenta
35	chr6:144222800-144225000	Enhancers	Adipose Nuclei	Adipose

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