Variant report
| Variant | rs9497312 |
|---|---|
| Chromosome Location | chr6:145778210-145778211 |
| allele | C/G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs11963928 | 1.00[EUR][1000 genomes] |
| rs1396644 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1396648 | 0.82[YRI][hapmap] |
| rs17075151 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17075280 | 1.00[EUR][1000 genomes] |
| rs6922956 | 0.89[AMR][1000 genomes] |
| rs6935624 | 0.89[AMR][1000 genomes] |
| rs6936142 | 0.89[AMR][1000 genomes] |
| rs73785028 | 0.89[AMR][1000 genomes] |
| rs9484984 | 0.89[AMR][1000 genomes] |
| rs9484989 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9497281 | 0.89[AMR][1000 genomes] |
| rs9497282 | 0.89[AMR][1000 genomes] |
| rs9497298 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9497300 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9497302 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9497306 | 0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9497307 | 0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9497310 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1017166 | chr6:145677071-145808448 | Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv604838 | chr6:145709371-145841146 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:145768200-145803800 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
