Variant report

Variant	rs9497717
Chromosome Location	chr6:147496379-147496380
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:147492692..147497394-chr6:147500774..147502791,4	K562	blood:
2	chr6:147495348..147497909-chr6:147517177..147519884,2	K562	blood:
3	chr6:147495613..147497909-chr6:147518076..147519884,2	K562	blood:
4	chr6:147487237..147491154-chr6:147494860..147497509,4	K562	blood:
5	chr6:147233328..147236267-chr6:147495924..147498076,2	K562	blood:
6	chr6:147492692..147499011-chr6:147499641..147502791,7	K562	blood:
7	chr6:147494574..147497224-chr6:147524457..147526191,2	MCF-7	breast:
8	chr6:147491046..147492710-chr6:147495269..147498001,2	K562	blood:
9	chr6:147495768..147498501-chr6:147520292..147523233,3	K562	blood:

No data

No data

No data

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11965185	1.00[AMR][1000 genomes]
rs56700189	1.00[AMR][1000 genomes]
rs56989474	1.00[AMR][1000 genomes]
rs57233238	1.00[AMR][1000 genomes]
rs57284678	1.00[AMR][1000 genomes]
rs57356769	1.00[AMR][1000 genomes]
rs57807457	1.00[AMR][1000 genomes]
rs58453975	1.00[AMR][1000 genomes]
rs58756001	1.00[AMR][1000 genomes]
rs60426717	1.00[AMR][1000 genomes]
rs61377514	1.00[AMR][1000 genomes]
rs9497716	1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9497718	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019245	chr6:147350834-147609776	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv538467	chr6:147350834-147609776	Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv886752	chr6:147443480-147729477	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147492000-147511400	Weak transcription	Aorta	Aorta
2	chr6:147492400-147498000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr6:147492600-147498000	Weak transcription	NHDF-Ad	bronchial
4	chr6:147494600-147498000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr6:147494600-147498200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr6:147494800-147500600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr6:147495400-147498000	Weak transcription	K562	blood
8	chr6:147495800-147496400	Enhancers	Fetal Kidney	kidney
9	chr6:147495800-147497600	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr6:147496000-147497600	Weak transcription	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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