Variant report

Variant	rs9498175
Chromosome Location	chr6:149210734-149210735
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:23001522..23002177-chr6:149210634..149211252,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12661836	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4897066	0.87[JPT][hapmap]
rs6912012	0.82[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs9386239	0.95[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032690	chr6:149206106-149398712	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9498175	C6orf103	cis	parietal	SCAN

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149193200-149218800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr6:149199400-149215600	Weak transcription	Spleen	Spleen
3	chr6:149203400-149213400	Weak transcription	Dnd41	blood
4	chr6:149204600-149210800	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr6:149205400-149211200	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr6:149206000-149210800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr6:149206000-149212600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr6:149206200-149212600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr6:149206400-149211000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr6:149206400-149211800	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr6:149206400-149212400	Enhancers	Fetal Muscle Leg	muscle
12	chr6:149207400-149211000	Enhancers	Colon Smooth Muscle	Colon
13	chr6:149207400-149211000	Weak transcription	NHDF-Ad	bronchial
14	chr6:149207400-149211400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr6:149207400-149214800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr6:149207800-149219400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr6:149207800-149221400	Weak transcription	Primary hematopoietic stem cells	blood
18	chr6:149207800-149237400	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr6:149208000-149217200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr6:149208000-149229800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr6:149208600-149210800	Weak transcription	Gastric	stomach
22	chr6:149208600-149210800	Weak transcription	Left Ventricle	heart
23	chr6:149208600-149211000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr6:149208600-149213200	Weak transcription	NHLF	lung
25	chr6:149208800-149210800	Enhancers	Brain Substantia Nigra	brain
26	chr6:149208800-149211800	Weak transcription	Brain Cingulate Gyrus	brain
27	chr6:149209000-149212600	Enhancers	Ovary	ovary
28	chr6:149209000-149213200	Weak transcription	NHEK	skin
29	chr6:149209000-149247600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr6:149209400-149210800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr6:149209400-149210800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr6:149209600-149213200	Enhancers	Fetal Heart	heart
33	chr6:149209600-149214800	Weak transcription	Fetal Stomach	stomach
34	chr6:149209800-149210800	Enhancers	Rectal Smooth Muscle	rectum
35	chr6:149209800-149211200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
36	chr6:149209800-149211400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr6:149209800-149230800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
38	chr6:149210000-149211000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
39	chr6:149210000-149211600	Enhancers	Stomach Smooth Muscle	stomach
40	chr6:149210000-149212400	Enhancers	HSMMtube	muscle
41	chr6:149210000-149218000	Weak transcription	H9 Cell Line	embryonic stem cell
42	chr6:149210000-149220800	Weak transcription	HUES6 Cell Line	embryonic stem cell
43	chr6:149210200-149210800	Enhancers	Brain Hippocampus Middle	brain
44	chr6:149210200-149210800	Enhancers	Esophagus	oesophagus
45	chr6:149210200-149210800	Enhancers	Hela-S3	cervix
46	chr6:149210200-149211000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr6:149210200-149211000	Enhancers	Pancreas	Pancrea
48	chr6:149210200-149211000	Enhancers	Right Ventricle	heart
49	chr6:149210200-149211200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
50	chr6:149210200-149211400	Weak transcription	Fetal Brain Female	brain

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