Variant report

Variant	rs9498261
Chromosome Location	chr6:149550987-149550988
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:149351996..149353852-chr6:149550968..149553135,2	MCF-7	breast:
2	chr6:149550516..149553121-chr6:149563876..149565392,2	MCF-7	breast:
3	chr6:149549830..149552790-chr6:149637558..149640199,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000236591	Chromatin interaction
ENSG00000225924	Chromatin interaction
ENSG00000055208	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024776	chr6:149398652-149654593	Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149540400-149551600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
2	chr6:149542200-149560600	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr6:149545400-149553000	Weak transcription	Rectal Smooth Muscle	rectum
4	chr6:149545800-149551600	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr6:149545800-149553000	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr6:149545800-149557800	Weak transcription	Colon Smooth Muscle	Colon
7	chr6:149545800-149560200	Weak transcription	Right Atrium	heart
8	chr6:149546000-149551600	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr6:149546800-149556200	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr6:149548000-149551400	Weak transcription	Adipose Nuclei	Adipose
11	chr6:149548600-149551000	Enhancers	Brain Germinal Matrix	brain
12	chr6:149548800-149551000	Enhancers	Fetal Brain Female	brain
13	chr6:149549000-149551000	Enhancers	Fetal Brain Male	brain
14	chr6:149549200-149552400	Enhancers	Ovary	ovary
15	chr6:149549600-149553000	Weak transcription	Fetal Thymus	thymus
16	chr6:149549600-149554000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr6:149549600-149557200	Weak transcription	Fetal Stomach	stomach
18	chr6:149549800-149552400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr6:149549800-149552800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr6:149549800-149553000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr6:149549800-149553600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr6:149550000-149552600	Enhancers	Brain Cingulate Gyrus	brain
23	chr6:149550000-149554000	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr6:149550000-149556000	Enhancers	Brain Hippocampus Middle	brain
25	chr6:149550200-149551000	Enhancers	Brain Angular Gyrus	brain
26	chr6:149550200-149551000	Enhancers	Pancreas	Pancrea
27	chr6:149550200-149552400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr6:149550200-149553000	Weak transcription	Fetal Heart	heart
29	chr6:149550200-149553600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr6:149550200-149554000	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr6:149550200-149554200	Enhancers	Brain Anterior Caudate	brain
32	chr6:149550200-149554200	Weak transcription	HSMMtube	muscle
33	chr6:149550200-149557800	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr6:149550400-149553000	Enhancers	Brain Substantia Nigra	brain
35	chr6:149550400-149554600	Weak transcription	Cortex derived primary cultured neurospheres	brain
36	chr6:149550600-149551400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr6:149550600-149552400	Weak transcription	Fetal Lung	lung
38	chr6:149550600-149553000	Weak transcription	HUES6 Cell Line	embryonic stem cell
39	chr6:149550800-149553200	Weak transcription	Placenta	Placenta

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