Variant report

Variant	rs9498649
Chromosome Location	chr6:102061769-102061770
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs9485498	1.00[AFR][1000 genomes]
rs9485521	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs9498650	1.00[YRI][hapmap]
rs9498656	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv538392	chr6:101938381-102148360	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv3384771	chr6:101996253-102283808	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:102046200-102062400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:102055600-102062200	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr6:102060400-102065400	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr6:102061000-102064200	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr6:102061400-102062400	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr6:102061400-102062600	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr6:102061400-102064000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr6:102061600-102061800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr6:102061600-102062800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
10	chr6:102061600-102064600	Enhancers	HUES64 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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