Variant report

Variant	rs9501998
Chromosome Location	chr6:392783-392784
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	WRNIP1	chr6:392530-392851	GM12878	blood:	n/a	n/a
2	ATF2	chr6:391527-393274	GM12878	blood:	n/a	n/a
3	POLR2A	chr6:391066-395245	GM12878	blood:	n/a	n/a
4	ZNF263	chr6:391762-392811	HEK293-T-REx	kidney:	n/a	chr6:392209-392230 chr6:392283-392292
5	PAX5	chr6:392660-392933	GM12878	blood:	n/a	n/a
6	E2F6	chr6:390933-393946	H1-hESC	embryonic stem cell:	n/a	chr6:391456-391463 chr6:390996-391008 chr6:392475-392485 chr6:391360-391367 chr6:391359-391368 chr6:391456-391463 chr6:391360-391367 chr6:391452-391463 chr6:391359-391371 chr6:391456-391463 chr6:392386-392398 chr6:391453-391468 chr6:393432-393442 chr6:392686-392701 chr6:392400-392409 chr6:390999-391008 chr6:391545-391557 chr6:391360-391367
7	CTBP2	chr6:391137-393001	H1-hESC	embryonic stem cell:	n/a	n/a
8	MTA3	chr6:389139-396628	GM12878	blood:	n/a	n/a
9	POLR2A	chr6:390417-396665	GM12892	blood:	n/a	n/a
10	BCLAF1	chr6:391162-396602	GM12878	blood:	n/a	chr6:396088-396097 chr6:396200-396209 chr6:391564-391577 chr6:392473-392486
11	POLR2A	chr6:390994-396663	GM15510	blood:	n/a	n/a
12	ETS1	chr6:391583-393240	GM12878	blood:	n/a	chr6:392470-392483 chr6:392873-392884
13	BCLAF1	chr6:391032-394460	GM12878	blood:	n/a	chr6:391564-391577 chr6:392473-392486
14	ATF2	chr6:391681-392784	GM12878	blood:	n/a	n/a
15	POLR2A	chr6:389483-413824	GM12891	blood:	n/a	n/a
16	CHD1	chr6:390958-396393	GM12878	blood:	n/a	chr6:390997-391007 chr6:393039-393049
17	POLR2A	chr6:391165-396688	GM18526	blood:	n/a	n/a
18	YY1	chr6:392665-392962	GM12891	blood:	n/a	chr6:392922-392936
19	STAT5A	chr6:392459-392908	GM12878	blood:	n/a	chr6:392760-392772
20	POLR2A	chr6:391067-396614	GM18951	blood:	n/a	n/a
21	POLR2A	chr6:389484-413893	GM12892	blood:	n/a	n/a
22	MXI1	chr6:390835-394337	GM12878	blood:	n/a	n/a
23	POU2F2	chr6:391652-393515	GM12891	blood:	n/a	chr6:392382-392394 chr6:392766-392778
24	ZEB1	chr6:392108-392832	GM12878	blood:	n/a	n/a
25	MTA3	chr6:391608-393476	GM12878	blood:	n/a	n/a
26	POU2F2	chr6:391655-394442	GM12878	blood:	n/a	chr6:392382-392394 chr6:392766-392778
27	MAX	chr6:391031-393732	H1-hESC	embryonic stem cell:	n/a	chr6:392390-392400
28	NFATC1	chr6:391536-396633	GM12878	blood:	n/a	n/a
29	POLR2A	chr6:389203-413841	GM12878	blood:	n/a	n/a
30	E2F6	chr6:391080-393866	H1-hESC	embryonic stem cell:	n/a	chr6:391456-391463 chr6:392475-392485 chr6:391360-391367 chr6:391359-391368 chr6:391456-391463 chr6:391360-391367 chr6:391452-391463 chr6:391359-391371 chr6:391456-391463 chr6:392386-392398 chr6:391453-391468 chr6:393432-393442 chr6:392686-392701 chr6:392400-392409 chr6:391545-391557 chr6:391360-391367
31	TCF3	chr6:391676-393851	GM12878	blood:	n/a	n/a
32	POLR2A	chr6:390471-400750	GM12892	blood:	n/a	n/a
33	POLR2A	chr6:390848-396675	GM12891	blood:	n/a	n/a
34	PML	chr6:392749-393042	GM12878	blood:	n/a	n/a
35	RUNX3	chr6:391584-393324	GM12878	blood:	n/a	n/a
36	RELA	chr6:391061-392907	GM15510	blood:	n/a	n/a
37	STAT5A	chr6:389276-396627	GM12878	blood:	n/a	chr6:394118-394125 chr6:392760-392772 chr6:393989-394001 chr6:396178-396186 chr6:390995-391007 chr6:395181-395189
38	POLR2A	chr6:390536-396691	GM12878	blood:	n/a	n/a
39	PAX5	chr6:391623-393431	GM12878	blood:	n/a	n/a
40	POLR2A	chr6:391023-395242	GM12878	blood:	n/a	n/a
41	BACH1	chr6:392146-392848	H1-hESC	embryonic stem cell:	n/a	n/a
42	ELF1	chr6:391649-393461	GM12878	blood:	n/a	chr6:391978-391987 chr6:392118-392130 chr6:392246-392258 chr6:393371-393383
43	POLR2A	chr6:391633-395277	GM12891	blood:	n/a	n/a
44	SUZ12	chr6:391844-394220	H1-hESC	embryonic stem cell:	n/a	n/a
45	POU2F2	chr6:391139-393456	GM12891	blood:	n/a	chr6:392382-392394 chr6:392766-392778
46	ELF1	chr6:391111-394281	GM12878	blood:	n/a	chr6:391978-391987 chr6:391561-391573 chr6:392118-392130 chr6:391515-391527 chr6:393618-393630 chr6:391163-391174 chr6:392246-392258 chr6:393371-393383
47	POU2F2	chr6:391589-393434	GM12878	blood:	n/a	chr6:392382-392394 chr6:392766-392778
48	MAX	chr6:392643-393296	GM12878	blood:	n/a	n/a
49	PAX5	chr6:392702-393255	GM12892	blood:	n/a	n/a
50	POLR2A	chr6:390855-396655	GM19099	blood:	n/a	n/a

Variant related genes	Relation type
IRF4	TF binding region

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11369723	0.95[ASN][1000 genomes]
rs3823305	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:53 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428134	chr6:60001-653718	Strong transcription Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	esv2758034	chr6:60001-775274	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	esv2759401	chr6:60001-775274	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
4	nsv531999	chr6:163083-588213	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
5	nsv1067791	chr6:163083-919234	Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
6	nsv497978	chr6:163083-919234	ZNF genes & repeats Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
7	nsv432823	chr6:165391-516350	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
8	nsv1024273	chr6:170425-510748	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
9	nsv538028	chr6:170425-510748	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
10	nsv1032462	chr6:170425-766201	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
11	nsv538029	chr6:170425-766201	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
12	nsv1026847	chr6:176684-395798	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
13	nsv821644	chr6:182761-411478	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
14	nsv1019126	chr6:183203-432978	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
15	nsv1032052	chr6:183203-438513	Weak transcription Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
16	nsv538040	chr6:183203-438513	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
17	nsv1020955	chr6:183203-447098	Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
18	nsv1034909	chr6:183203-464651	Bivalent/Poised TSS Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
19	nsv1034089	chr6:183203-714494	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
20	nsv1026841	chr6:195438-447098	Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
21	nsv538051	chr6:195438-447098	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
22	esv2757151	chr6:217334-411954	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
23	nsv538053	chr6:230804-757589	Enhancers Strong transcription Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
24	nsv1022334	chr6:231934-395798	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
25	nsv830568	chr6:232604-411249	Flanking Bivalent TSS/Enh Enhancers Active TSS ZNF genes & repeats Genic enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
26	nsv462601	chr6:253861-394293	Enhancers Genic enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
27	nsv600749	chr6:253861-394293	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
28	nsv820552	chr6:254458-396285	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
29	nsv823378	chr6:254941-396689	Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
30	nsv823384	chr6:256659-396285	Active TSS Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
31	nsv1028118	chr6:257341-439985	Flanking Bivalent TSS/Enh Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
32	nsv1016410	chr6:259527-499709	ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
33	nsv538055	chr6:259527-499709	Weak transcription Genic enhancers Bivalent Enhancer Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
34	nsv529409	chr6:259528-439290	Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
35	nsv497844	chr6:259531-439401	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
36	nsv1035064	chr6:264744-397937	Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
37	nsv533283	chr6:265806-588274	Strong transcription Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
38	nsv538063	chr6:266046-464651	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
39	nsv1032977	chr6:266046-538203	ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
40	nsv538064	chr6:266046-538203	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
41	esv2754208	chr6:269735-395634	Enhancers Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
42	nsv917677	chr6:279313-439290	Strong transcription Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
43	nsv883344	chr6:285695-396321	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
44	nsv918239	chr6:290585-402087	Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
45	nsv870378	chr6:291594-397633	Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
46	nsv823390	chr6:295899-452604	Bivalent Enhancer Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
47	nsv1030962	chr6:302294-447036	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
48	nsv1028946	chr6:334825-404771	Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
49	nsv432841	chr6:367109-722716	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
50	nsv462606	chr6:383546-439985	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:390000-394800	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum
2	chr6:390800-394200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
3	chr6:391000-393800	Active TSS	Primary T helper naive cells from peripheral blood	blood
4	chr6:391000-393800	Active TSS	Primary T killer naive cells fromperipheralblood	blood
5	chr6:391000-394000	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
6	chr6:391000-394000	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
7	chr6:391000-394000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr6:391000-394000	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr6:391000-394200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
10	chr6:391000-394200	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
11	chr6:391000-394200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
12	chr6:391000-394200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr6:391000-394400	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
14	chr6:391200-392800	Active TSS	Placenta Amnion	Placenta Amnion
15	chr6:391200-393000	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr6:391200-393200	Flanking Bivalent TSS/Enh	Esophagus	oesophagus
17	chr6:391200-393800	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
18	chr6:391200-394000	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr6:391200-394200	Bivalent/Poised TSS	Rectal Mucosa Donor 31	rectum
20	chr6:391200-400600	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
21	chr6:391400-392800	Bivalent Enhancer	HUVEC	blood vessel
22	chr6:391400-393200	Bivalent/Poised TSS	Thymus	Thymus
23	chr6:391400-393600	Bivalent/Poised TSS	Small Intestine	intestine
24	chr6:391400-393800	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
25	chr6:391400-393800	Active TSS	Primary B cells from peripheral blood	blood
26	chr6:391400-393800	Active TSS	Primary T helper naive cells fromperipheralblood	blood
27	chr6:391400-393800	Bivalent/Poised TSS	Colon Smooth Muscle	Colon
28	chr6:391400-393800	Active TSS	GM12878-XiMat	blood
29	chr6:391400-394000	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
30	chr6:391400-394000	Active TSS	Primary T killer memory cells from peripheral blood	blood
31	chr6:391400-394200	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
32	chr6:391800-392800	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood
33	chr6:391800-392800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells	blood
34	chr6:391800-392800	Flanking Bivalent TSS/Enh	Brain Cingulate Gyrus	brain
35	chr6:391800-392800	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
36	chr6:391800-392800	Flanking Bivalent TSS/Enh	Brain Dorsolateral Prefrontal Cortex	brain
37	chr6:391800-392800	Flanking Bivalent TSS/Enh	Colonic Mucosa	Colon
38	chr6:391800-392800	Flanking Bivalent TSS/Enh	Placenta	Placenta
39	chr6:391800-392800	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
40	chr6:391800-392800	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach
41	chr6:391800-393000	Flanking Bivalent TSS/Enh	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr6:391800-393000	Flanking Bivalent TSS/Enh	Brain Hippocampus Middle	brain
43	chr6:391800-393000	Flanking Bivalent TSS/Enh	Brain Inferior Temporal Lobe	brain
44	chr6:391800-393000	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
45	chr6:391800-393200	Flanking Active TSS	Pancreas	Pancrea
46	chr6:391800-393200	Flanking Active TSS	Spleen	Spleen
47	chr6:391800-393400	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
48	chr6:391800-393400	Flanking Bivalent TSS/Enh	ES-UCSF4 Cell Line	embryonic stem cell
49	chr6:391800-393400	Flanking Bivalent TSS/Enh	Primary monocytes fromperipheralblood	blood
50	chr6:391800-393400	Flanking Bivalent TSS/Enh	Adipose Nuclei	Adipose

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