Variant report

Variant	rs9502221
Chromosome Location	chr6:4682543-4682544
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs13195286	0.89[ASN][1000 genomes]
rs2076518	0.94[ASN][1000 genomes]
rs6903613	0.85[CHB][hapmap]
rs9378898	0.94[ASN][1000 genomes]
rs9378899	0.94[ASN][1000 genomes]
rs9378900	0.94[ASN][1000 genomes]
rs9378901	0.94[ASN][1000 genomes]
rs9378902	0.94[ASN][1000 genomes]
rs9392060	0.94[ASN][1000 genomes]
rs9504195	0.94[ASN][1000 genomes]
rs9504197	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3366530	chr6:4471528-4865322	ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv528627	chr6:4614058-4731340	Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv883416	chr6:4666878-4690760	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:4669000-4695600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:4675600-4684000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:4678200-4684000	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr6:4682400-4682800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr6:4682400-4683400	Enhancers	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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