Variant report

Variant	rs9502329
Chromosome Location	chr6:5696772-5696773
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1001568	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11752777	0.80[ASN][1000 genomes]
rs12210617	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12216327	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4140654	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6918561	0.87[AMR][1000 genomes]
rs6918675	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6935719	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs760675	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7739358	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7742697	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7746913	0.85[AMR][1000 genomes]
rs878988	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9328328	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9378439	0.89[ASN][1000 genomes]
rs9378983	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3473790	chr6:5692573-5707035	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv3473791	chr6:5692573-5707035	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv823407	chr6:5692735-5706712	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv970201	chr6:5693538-5699453	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:5672200-5705800	Weak transcription	Thymus	Thymus
2	chr6:5673800-5701200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr6:5673800-5709800	Weak transcription	Stomach Smooth Muscle	stomach
4	chr6:5678000-5709400	Weak transcription	Pancreas	Pancrea
5	chr6:5684800-5706000	Weak transcription	Ovary	ovary
6	chr6:5685000-5698600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr6:5691400-5698200	Weak transcription	Spleen	Spleen
8	chr6:5692800-5701400	Weak transcription	Right Atrium	heart
9	chr6:5695200-5700000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr6:5695400-5696800	Enhancers	Primary B cells from cord blood	blood
11	chr6:5695800-5697800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr6:5695800-5698400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr6:5695800-5698800	Weak transcription	Primary T cells fromperipheralblood	blood
14	chr6:5695800-5699600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr6:5695800-5709800	Weak transcription	Fetal Stomach	stomach
16	chr6:5696200-5698800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr6:5696200-5699200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr6:5696200-5699400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr6:5696200-5707600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr6:5696200-5712400	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr6:5696400-5697200	Enhancers	Monocytes-CD14+_RO01746	blood
22	chr6:5696400-5697400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr6:5696400-5697400	Enhancers	Primary T cells from cord blood	blood
24	chr6:5696400-5698200	Weak transcription	Primary B cells from peripheral blood	blood
25	chr6:5696400-5698400	Weak transcription	Fetal Thymus	thymus
26	chr6:5696400-5698800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
27	chr6:5696400-5699000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr6:5696400-5699000	Weak transcription	Dnd41	blood
29	chr6:5696400-5699200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr6:5696400-5705400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
31	chr6:5696600-5697600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr6:5696600-5697600	Weak transcription	Primary monocytes fromperipheralblood	blood
33	chr6:5696600-5698000	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr6:5696600-5698400	Weak transcription	GM12878-XiMat	blood

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