Variant report

Variant	rs9502429
Chromosome Location	chr6:6284125-6284126
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs4959377	0.87[CHB][hapmap];0.81[CHD][hapmap];0.87[GIH][hapmap]
rs7745141	0.87[CHB][hapmap];0.81[CHD][hapmap]
rs7770172	0.85[CHB][hapmap]
rs9405911	0.81[CHD][hapmap];0.85[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883421	chr6:6163492-6574384	Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv883422	chr6:6163492-6769930	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:6265800-6310000	Weak transcription	HSMM	muscle
2	chr6:6276800-6292200	Weak transcription	HSMMtube	muscle
3	chr6:6283800-6284400	Weak transcription	Fetal Kidney	kidney
4	chr6:6283800-6286000	Enhancers	Primary B cells from cord blood	blood
5	chr6:6284000-6285000	Enhancers	Primary hematopoietic stem cells	blood
6	chr6:6284000-6285200	Enhancers	Primary B cells from peripheral blood	blood
7	chr6:6284000-6285200	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr6:6284000-6285800	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr6:6284000-6285800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr6:6284000-6285800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links