Variant report

Variant	rs9504291
Chromosome Location	chr6:4935373-4935374
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:4932165..4934498-chr6:4934564..4936978,2	MCF-7	breast:
2	chr6:4934856..4938294-chr6:4940217..4942355,4	K562	blood:
3	chr6:4928518..4932053-chr6:4933158..4936712,4	K562	blood:

Variant related genes	Relation type
ENSG00000153046	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11754469	0.87[ASN][1000 genomes]
rs11756225	0.87[ASN][1000 genomes]
rs1557031	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4960050	0.87[ASN][1000 genomes]
rs9328278	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9502254	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023527	chr6:4729592-5387176	Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	esv2422499	chr6:4745428-5073222	Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv830577	chr6:4834567-5050544	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv462622	chr6:4904380-5172009	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
5	nsv600871	chr6:4904380-5172009	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:4908000-4935600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr6:4913200-4936000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr6:4913200-4941000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr6:4913600-4938000	Weak transcription	Primary B cells from peripheral blood	blood
5	chr6:4915800-4942400	Weak transcription	Aorta	Aorta
6	chr6:4916600-4935400	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr6:4918000-4936000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr6:4923000-4937800	Weak transcription	Primary T cells from cord blood	blood
9	chr6:4925600-4941600	Weak transcription	Primary hematopoietic stem cells	blood
10	chr6:4927600-4940200	Weak transcription	Primary T helper cells PMA-I stimulated	--
11	chr6:4928800-4935600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr6:4929400-4941600	Weak transcription	Osteobl	bone
13	chr6:4930200-4939800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr6:4930800-4936000	Weak transcription	Brain Hippocampus Middle	brain
15	chr6:4930800-4940200	Weak transcription	NH-A	brain
16	chr6:4930800-4940600	Weak transcription	Primary T helper cells fromperipheralblood	blood
17	chr6:4931200-4935800	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr6:4932000-4942000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr6:4932200-4935800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr6:4932200-4935800	Weak transcription	Brain Cingulate Gyrus	brain
21	chr6:4932200-4940800	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr6:4932200-4945000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr6:4932400-4935600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr6:4932400-4935600	Weak transcription	Rectal Smooth Muscle	rectum
25	chr6:4932400-4935800	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr6:4932400-4936000	Weak transcription	Duodenum Mucosa	Duodenum
27	chr6:4932400-4936200	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr6:4932400-4936600	Weak transcription	Brain Anterior Caudate	brain
29	chr6:4932400-4936800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr6:4932400-4936800	Weak transcription	NHLF	lung
31	chr6:4932400-4941000	Weak transcription	HSMM	muscle
32	chr6:4932400-4941400	Weak transcription	NHDF-Ad	bronchial
33	chr6:4932400-4941600	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr6:4932400-4942000	Weak transcription	Stomach Smooth Muscle	stomach
35	chr6:4932400-4942400	Weak transcription	Duodenum Smooth Muscle	Duodenum
36	chr6:4932600-4936200	Weak transcription	Fetal Heart	heart
37	chr6:4932600-4936400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
38	chr6:4932600-4936600	Weak transcription	Stomach Mucosa	stomach
39	chr6:4932600-4940600	Weak transcription	Placenta Amnion	Placenta Amnion
40	chr6:4932600-4941000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr6:4932600-4942200	Weak transcription	HUES6 Cell Line	embryonic stem cell
42	chr6:4932600-4944200	Weak transcription	HUES48 Cell Line	embryonic stem cell
43	chr6:4932600-4944600	Weak transcription	Colonic Mucosa	Colon
44	chr6:4932800-4936200	Weak transcription	A549	lung
45	chr6:4932800-4944400	Weak transcription	Thymus	Thymus
46	chr6:4933000-4938000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr6:4933000-4940200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
48	chr6:4933000-4942200	Weak transcription	Fetal Intestine Large	intestine
49	chr6:4933000-4944400	Weak transcription	H9 Cell Line	embryonic stem cell
50	chr6:4933200-4935600	Weak transcription	NHEK	skin

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