Variant report

Variant	rs9504297
Chromosome Location	chr6:4971151-4971152
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs59365793	0.81[AFR][1000 genomes]
rs73359952	0.81[AFR][1000 genomes]
rs9502257	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023527	chr6:4729592-5387176	Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	esv2422499	chr6:4745428-5073222	Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv830577	chr6:4834567-5050544	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv462622	chr6:4904380-5172009	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
5	nsv600871	chr6:4904380-5172009	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
6	nsv1033905	chr6:4955826-5080904	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:4954800-4973800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:4958400-4973800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:4966200-4973800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr6:4966200-4974200	Weak transcription	Rectal Smooth Muscle	rectum
5	chr6:4969400-4971400	Enhancers	Skeletal Muscle Male	skeletal muscle
6	chr6:4969600-4971600	Enhancers	Fetal Muscle Leg	muscle
7	chr6:4970400-4971200	Enhancers	NHLF	lung
8	chr6:4970400-4971400	Enhancers	Fetal Stomach	stomach
9	chr6:4970400-4971800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr6:4970600-4971600	Enhancers	Fetal Brain Male	brain
11	chr6:4970600-4972600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr6:4970800-4971200	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr6:4970800-4971400	Enhancers	Colon Smooth Muscle	Colon
14	chr6:4970800-4971400	Enhancers	Duodenum Smooth Muscle	Duodenum
15	chr6:4970800-4971400	Enhancers	Fetal Muscle Trunk	muscle
16	chr6:4970800-4971600	Enhancers	Adipose Nuclei	Adipose
17	chr6:4970800-4971600	Flanking Active TSS	Stomach Smooth Muscle	stomach
18	chr6:4970800-4971600	Enhancers	HSMMtube	muscle
19	chr6:4970800-4972200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr6:4970800-4972200	Enhancers	Fetal Brain Female	brain
21	chr6:4971000-4971200	Enhancers	Breast Myoepithelial Primary Cells	Breast
22	chr6:4971000-4971200	Enhancers	Cortex derived primary cultured neurospheres	brain
23	chr6:4971000-4971200	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr6:4971000-4971400	Enhancers	HUES6 Cell Line	embryonic stem cell
25	chr6:4971000-4971400	Enhancers	Esophagus	oesophagus
26	chr6:4971000-4971400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
27	chr6:4971000-4971600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr6:4971000-4971600	Enhancers	Fetal Kidney	kidney
29	chr6:4971000-4973800	Weak transcription	Brain Germinal Matrix	brain
30	chr6:4971000-4973800	Weak transcription	Psoas Muscle	Psoas
31	chr6:4971000-4974000	Weak transcription	Fetal Lung	lung

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