Variant report

Variant	rs9504325
Chromosome Location	chr6:5095421-5095422
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:5095410..5098025-chr6:5107266..5109190,2	MCF-7	breast:
2	chr6:5094149..5096887-chr6:5098967..5101711,2	K562	blood:
3	chr6:5082435..5084667-chr6:5094252..5095807,2	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10498665	1.00[YRI][hapmap]
rs11242995	1.00[YRI][hapmap]
rs17139796	1.00[EUR][1000 genomes]
rs2773332	1.00[EUR][1000 genomes]
rs466906	1.00[EUR][1000 genomes]
rs4959334	1.00[EUR][1000 genomes]
rs7771926	1.00[CHB][hapmap]
rs9502267	1.00[EUR][1000 genomes]
rs9502269	1.00[EUR][1000 genomes]
rs9504326	1.00[EUR][1000 genomes]
rs9504328	1.00[EUR][1000 genomes]
rs9504329	1.00[EUR][1000 genomes]
rs9504355	1.00[EUR][1000 genomes]
rs9504375	1.00[CHB][hapmap]
rs9791263	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023527	chr6:4729592-5387176	Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv462622	chr6:4904380-5172009	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv600871	chr6:4904380-5172009	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	nsv600872	chr6:4975313-5342190	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
5	nsv1031837	chr6:4996667-5418726	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
6	nsv1017380	chr6:5007870-5152551	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
7	nsv1017373	chr6:5066785-5128943	Weak transcription Bivalent Enhancer Bivalent/Poised TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv538112	chr6:5066785-5128943	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv1034681	chr6:5070351-5387176	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
10	nsv538113	chr6:5070351-5387176	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
11	nsv1018152	chr6:5077025-5387176	Flanking Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
12	nsv600873	chr6:5089278-5400658	Enhancers Active TSS Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:5090600-5095600	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr6:5091000-5108200	Weak transcription	Spleen	Spleen
3	chr6:5091000-5108800	Weak transcription	Right Atrium	heart
4	chr6:5091000-5109000	Weak transcription	Lung	lung
5	chr6:5093000-5097000	Enhancers	Fetal Heart	heart
6	chr6:5093600-5095800	Enhancers	NHDF-Ad	bronchial
7	chr6:5093600-5095800	Enhancers	NHLF	lung
8	chr6:5093600-5096000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr6:5093800-5095600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr6:5094000-5095800	Enhancers	Hela-S3	cervix
11	chr6:5094000-5096000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr6:5094000-5096000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr6:5094000-5096000	Enhancers	Osteobl	bone
14	chr6:5094400-5097600	Enhancers	Primary B cells from peripheral blood	blood
15	chr6:5094400-5098800	Weak transcription	Aorta	Aorta
16	chr6:5094600-5095600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr6:5094800-5095800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr6:5094800-5095800	Weak transcription	Left Ventricle	heart
19	chr6:5094800-5096000	Enhancers	Muscle Satellite Cultured Cells	--
20	chr6:5094800-5096000	Enhancers	HSMMtube	muscle
21	chr6:5094800-5096600	Weak transcription	K562	blood
22	chr6:5094800-5097400	Weak transcription	Right Ventricle	heart
23	chr6:5095000-5096000	Flanking Active TSS	GM12878-XiMat	blood
24	chr6:5095000-5096000	Enhancers	HSMM	muscle
25	chr6:5095200-5095600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr6:5095200-5095600	Enhancers	Primary monocytes fromperipheralblood	blood
27	chr6:5095200-5095600	Enhancers	NH-A	brain
28	chr6:5095400-5095800	Weak transcription	HepG2	liver
29	chr6:5095400-5096000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr6:5095400-5096200	Enhancers	Primary B cells from cord blood	blood
31	chr6:5095400-5106800	Weak transcription	Fetal Stomach	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links