Variant report

Variant	rs9504332
Chromosome Location	chr6:5113933-5113934
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:5109410..5110934-chr6:5113324..5116153,2	K562	blood:

Variant related genes	Relation type
ENSG00000214113	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs1076728	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs9504330	1.00[YRI][hapmap];1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023527	chr6:4729592-5387176	Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv462622	chr6:4904380-5172009	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv600871	chr6:4904380-5172009	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	nsv600872	chr6:4975313-5342190	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
5	nsv1031837	chr6:4996667-5418726	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
6	nsv1017380	chr6:5007870-5152551	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
7	nsv1017373	chr6:5066785-5128943	Weak transcription Bivalent Enhancer Bivalent/Poised TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv538112	chr6:5066785-5128943	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv1034681	chr6:5070351-5387176	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
10	nsv538113	chr6:5070351-5387176	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
11	nsv1018152	chr6:5077025-5387176	Flanking Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
12	nsv600873	chr6:5089278-5400658	Enhancers Active TSS Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:5095800-5114200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr6:5098600-5117000	Weak transcription	Fetal Brain Female	brain
3	chr6:5099000-5130000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr6:5101800-5132200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr6:5103200-5114000	Weak transcription	Dnd41	blood
6	chr6:5103200-5132800	Weak transcription	Primary hematopoietic stem cells	blood
7	chr6:5105200-5115800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr6:5105200-5131400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr6:5105800-5125600	Weak transcription	Ovary	ovary
10	chr6:5105800-5128200	Weak transcription	Primary B cells from cord blood	blood
11	chr6:5107800-5132000	Weak transcription	Pancreas	Pancrea
12	chr6:5109000-5116400	Weak transcription	Brain Germinal Matrix	brain
13	chr6:5109200-5118600	Weak transcription	Esophagus	oesophagus
14	chr6:5109200-5121800	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr6:5109200-5130200	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr6:5109400-5121600	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr6:5110000-5114000	Weak transcription	Duodenum Mucosa	Duodenum
18	chr6:5110200-5121800	Weak transcription	Brain Anterior Caudate	brain
19	chr6:5110400-5121600	Weak transcription	Adipose Nuclei	Adipose
20	chr6:5111200-5119200	Weak transcription	Fetal Intestine Large	intestine
21	chr6:5112000-5114000	Weak transcription	Primary B cells from peripheral blood	blood
22	chr6:5112200-5128600	Weak transcription	Primary T cells from cord blood	blood
23	chr6:5112400-5114400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr6:5112600-5115600	Weak transcription	Lung	lung
25	chr6:5112600-5122800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr6:5112600-5123400	Weak transcription	Fetal Lung	lung
27	chr6:5112800-5117200	Weak transcription	Placenta	Placenta
28	chr6:5112800-5121600	Weak transcription	Spleen	Spleen
29	chr6:5112800-5122800	Weak transcription	Right Ventricle	heart
30	chr6:5112800-5124800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr6:5112800-5125400	Weak transcription	Right Atrium	heart
32	chr6:5112800-5132600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
33	chr6:5113000-5116800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr6:5113000-5119000	Weak transcription	A549	lung
35	chr6:5113000-5130400	Weak transcription	Gastric	stomach
36	chr6:5113200-5114200	Weak transcription	Fetal Heart	heart
37	chr6:5113200-5114600	Weak transcription	K562	blood
38	chr6:5113200-5115000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr6:5113200-5115000	Weak transcription	HepG2	liver
40	chr6:5113200-5115600	Weak transcription	Left Ventricle	heart
41	chr6:5113200-5118600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr6:5113200-5122200	Weak transcription	Fetal Stomach	stomach
43	chr6:5113200-5122800	Weak transcription	Fetal Muscle Trunk	muscle
44	chr6:5113200-5122800	Weak transcription	Fetal Muscle Leg	muscle
45	chr6:5113200-5124800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr6:5113200-5130400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr6:5113400-5122800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr6:5113400-5132400	Weak transcription	Stomach Smooth Muscle	stomach
49	chr6:5113600-5115800	Weak transcription	Fetal Intestine Small	intestine
50	chr6:5113600-5117000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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