Variant report

Variant	rs9504554
Chromosome Location	chr6:5850730-5850731
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs9502360	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5183	chr6:5821731-5866796	Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:5849200-5850800	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:5849400-5851000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:5849400-5851000	Weak transcription	Right Atrium	heart
4	chr6:5849800-5850800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr6:5850000-5851000	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr6:5850400-5850800	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
7	chr6:5850600-5850800	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr6:5850600-5850800	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
9	chr6:5850600-5850800	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
10	chr6:5850600-5850800	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
11	chr6:5850600-5850800	Enhancers	Brain Cingulate Gyrus	brain
12	chr6:5850600-5851000	Bivalent Enhancer	H9 Cell Line	embryonic stem cell
13	chr6:5850600-5851000	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr6:5850600-5851000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
15	chr6:5850600-5851000	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr6:5850600-5851200	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
17	chr6:5850600-5851200	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr6:5850600-5851200	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
19	chr6:5850600-5851200	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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