Variant report

Variant	rs9504555
Chromosome Location	chr6:5851120-5851121
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ATF2	chr6:5850961-5852209	H1-hESC	embryonic stem cell:	n/a	n/a
2	TCF12	chr6:5850981-5851561	H1-hESC	embryonic stem cell:	n/a	chr6:5851365-5851372
3	ZNF143	chr6:5850999-5851430	H1-hESC	embryonic stem cell:	n/a	n/a
4	EP300	chr6:5851061-5851519	H1-hESC	embryonic stem cell:	n/a	n/a
5	TEAD4	chr6:5851052-5851858	H1-hESC	embryonic stem cell:	n/a	n/a
6	SIN3A	chr6:5851002-5851500	H1-hESC	embryonic stem cell:	n/a	n/a
7	POLR2A	chr6:5850657-5852284	H1-hESC	embryonic stem cell:	n/a	n/a
8	BACH1	chr6:5850971-5851313	H1-hESC	embryonic stem cell:	n/a	n/a
9	SIN3AK20	chr6:5851112-5851393	H1-hESC	embryonic stem cell:	n/a	n/a
10	RAD21	chr6:5851025-5851482	H1-hESC	embryonic stem cell:	n/a	chr6:5851059-5851072
11	HDAC2	chr6:5850967-5851430	H1-hESC	embryonic stem cell:	n/a	n/a
12	POLR2A	chr6:5850727-5852069	H1-hESC	embryonic stem cell:	n/a	n/a
13	MAX	chr6:5851064-5852213	H1-hESC	embryonic stem cell:	n/a	chr6:5851945-5851952 chr6:5851942-5851953 chr6:5851944-5851953 chr6:5851375-5851385
14	TEAD4	chr6:5850918-5851551	H1-hESC	embryonic stem cell:	n/a	n/a
15	RAD21	chr6:5850973-5851539	H1-hESC	embryonic stem cell:	n/a	chr6:5851059-5851072 chr6:5851018-5851027
16	POLR2A	chr6:5851030-5852070	H1-hESC	embryonic stem cell:	n/a	n/a
17	POLR2A	chr6:5851073-5851552	H1-hESC	embryonic stem cell:	n/a	n/a
18	SP1	chr6:5851001-5851570	H1-hESC	embryonic stem cell:	n/a	chr6:5851371-5851385 chr6:5851374-5851386 chr6:5851374-5851386
19	ATF2	chr6:5850966-5852068	H1-hESC	embryonic stem cell:	n/a	n/a
20	TAF1	chr6:5851057-5852124	H1-hESC	embryonic stem cell:	n/a	n/a
21	SP1	chr6:5850982-5851879	H1-hESC	embryonic stem cell:	n/a	chr6:5851371-5851385 chr6:5851374-5851386 chr6:5851598-5851619 chr6:5851374-5851386
22	JUND	chr6:5850837-5851802	H1-hESC	embryonic stem cell:	n/a	n/a

Variant related genes	Relation type
ENSG00000233064	TF binding region

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs9504556	1.00[AMR][1000 genomes]
rs9504557	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5183	chr6:5821731-5866796	Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:5850600-5851200	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
2	chr6:5850600-5851200	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr6:5850600-5851200	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
4	chr6:5850600-5851200	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
5	chr6:5850800-5851200	Bivalent Enhancer	Primary B cells from peripheral blood	blood
6	chr6:5850800-5851200	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
7	chr6:5850800-5851200	Enhancers	Fetal Brain Male	brain
8	chr6:5850800-5851200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
9	chr6:5850800-5851200	Bivalent Enhancer	Fetal Thymus	thymus
10	chr6:5850800-5851200	Bivalent Enhancer	Thymus	Thymus
11	chr6:5850800-5851400	Flanking Bivalent TSS/Enh	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr6:5850800-5851400	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr6:5850800-5852200	Active TSS	Brain Cingulate Gyrus	brain
14	chr6:5850800-5852200	Active TSS	Fetal Brain Female	brain
15	chr6:5850800-5852400	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
16	chr6:5851000-5851200	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
17	chr6:5851000-5851200	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
18	chr6:5851000-5851200	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
19	chr6:5851000-5851200	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr6:5851000-5851200	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
21	chr6:5851000-5851200	Bivalent Enhancer	Primary neutrophils fromperipheralblood	blood
22	chr6:5851000-5851200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells	blood
23	chr6:5851000-5851200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
24	chr6:5851000-5851200	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
25	chr6:5851000-5851200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
26	chr6:5851000-5851200	Flanking Bivalent TSS/Enh	Primary T helper 17 cells PMA-I stimulated	--
27	chr6:5851000-5851200	Active TSS	Primary T regulatory cells fromperipheralblood	blood
28	chr6:5851000-5851200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
29	chr6:5851000-5851200	Enhancers	Primary T killer memory cells from peripheral blood	blood
30	chr6:5851000-5851200	Enhancers	Cortex derived primary cultured neurospheres	brain
31	chr6:5851000-5851200	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr6:5851000-5851200	Bivalent Enhancer	Adipose Nuclei	Adipose
33	chr6:5851000-5851200	Flanking Active TSS	Colonic Mucosa	Colon
34	chr6:5851000-5851200	Bivalent/Poised TSS	Fetal Adrenal Gland	Adrenal Gland
35	chr6:5851000-5851200	Bivalent Enhancer	Fetal Muscle Leg	muscle
36	chr6:5851000-5851200	Bivalent Enhancer	Placenta	Placenta
37	chr6:5851000-5851200	Enhancers	Gastric	stomach
38	chr6:5851000-5851200	Enhancers	Small Intestine	intestine
39	chr6:5851000-5851200	Bivalent Enhancer	Stomach Mucosa	stomach
40	chr6:5851000-5851400	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr6:5851000-5851400	Flanking Bivalent TSS/Enh	Primary B cells from cord blood	blood
42	chr6:5851000-5851400	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
43	chr6:5851000-5851400	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
44	chr6:5851000-5851400	Flanking Bivalent TSS/Enh	Duodenum Mucosa	Duodenum
45	chr6:5851000-5851400	Bivalent/Poised TSS	Fetal Kidney	kidney
46	chr6:5851000-5851400	Enhancers	Pancreas	Pancrea
47	chr6:5851000-5851400	Bivalent Enhancer	NH-A	brain
48	chr6:5851000-5851600	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr6:5851000-5851600	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood
50	chr6:5851000-5851600	Bivalent/Poised TSS	Brain Germinal Matrix	brain

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