Variant report

Variant	rs950511
Chromosome Location	chr8:20301920-20301921
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs1016646	1.00[AFR][1000 genomes]
rs10464996	1.00[AFR][1000 genomes]
rs10503682	1.00[AFR][1000 genomes]
rs12056831	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1383248	1.00[AFR][1000 genomes]
rs17092374	0.88[EUR][1000 genomes]
rs17092434	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17092492	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17092502	0.88[EUR][1000 genomes]
rs17092511	0.88[EUR][1000 genomes]
rs17092733	1.00[AFR][1000 genomes]
rs17412582	1.00[AFR][1000 genomes]
rs17412734	1.00[AFR][1000 genomes]
rs17412740	1.00[AFR][1000 genomes]
rs17419795	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs17420434	1.00[AFR][1000 genomes]
rs17420455	1.00[AFR][1000 genomes]
rs17490805	1.00[AFR][1000 genomes]
rs17490847	1.00[AFR][1000 genomes]
rs17491153	1.00[AFR][1000 genomes]
rs17492344	1.00[AFR][1000 genomes]
rs1979430	1.00[AFR][1000 genomes]
rs1979431	1.00[AFR][1000 genomes]
rs1979432	1.00[AFR][1000 genomes]
rs2005365	1.00[AFR][1000 genomes]
rs2086886	1.00[AFR][1000 genomes]
rs2170171	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2170172	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35673104	1.00[AFR][1000 genomes]
rs4506236	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4601325	1.00[AFR][1000 genomes]
rs4610764	1.00[AFR][1000 genomes]
rs4921708	1.00[AFR][1000 genomes]
rs4921713	1.00[AFR][1000 genomes]
rs4921718	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4922161	1.00[AFR][1000 genomes]
rs4922175	1.00[AFR][1000 genomes]
rs4922177	1.00[AFR][1000 genomes]
rs4922178	1.00[AFR][1000 genomes]
rs4922179	1.00[AFR][1000 genomes]
rs4922180	1.00[AFR][1000 genomes]
rs4922181	1.00[AFR][1000 genomes]
rs4922182	1.00[AFR][1000 genomes]
rs4922183	1.00[AFR][1000 genomes]
rs4922187	1.00[AFR][1000 genomes]
rs4922189	1.00[AFR][1000 genomes]
rs4922194	0.88[EUR][1000 genomes]
rs4922195	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4922196	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4922200	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4922210	1.00[AFR][1000 genomes]
rs56157706	1.00[AFR][1000 genomes]
rs56171374	1.00[AFR][1000 genomes]
rs58204896	0.88[EUR][1000 genomes]
rs58247975	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58430710	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59876773	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60888624	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6586910	1.00[AFR][1000 genomes]
rs6586915	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6989281	1.00[AFR][1000 genomes]
rs6994255	1.00[AFR][1000 genomes]
rs6999584	1.00[AFR][1000 genomes]
rs6999736	1.00[AFR][1000 genomes]
rs7003097	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73609155	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73609159	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7465534	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7827252	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7827262	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7830125	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs999746	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033511	chr8:19751299-20625091	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv530877	chr8:19873053-20593254	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	esv2758152	chr8:20228949-20514807	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv2759603	chr8:20228949-20514807	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv469890	chr8:20239114-20445136	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv482881	chr8:20239114-20445136	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:20295000-20311000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr8:20295400-20305600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr8:20300400-20310200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr8:20300800-20302000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr8:20301200-20302000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
6	chr8:20301400-20302600	Bivalent Enhancer	Fetal Lung	lung
7	chr8:20301600-20302000	Enhancers	Primary T cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links