Variant report

Variant	rs950687
Chromosome Location	chr8:52807602-52807603
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:13)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:13 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA1	chr8:52807463-52807871	HepG2	liver:	n/a	n/a
2	RCOR1	chr8:52807348-52807761	GM12878	blood:	n/a	n/a
3	POLR2A	chr8:52806101-52808455	MCF10A-Er-Src	breast:	n/a	n/a
4	STAT3	chr8:52807517-52807870	GM12878	blood:	n/a	n/a
5	POLR2A	chr8:52807531-52808258	GM12878	blood:	n/a	n/a
6	FOXA1	chr8:52807556-52808038	HepG2	liver:	n/a	n/a
7	FOXA2	chr8:52807578-52807867	HepG2	liver:	n/a	n/a
8	POLR2A	chr8:52804446-52808348	K562	blood:	n/a	n/a
9	FOXA1	chr8:52807528-52807926	HepG2	liver:	n/a	n/a
10	ARID3A	chr8:52807160-52807728	K562	blood:	n/a	n/a
11	FOXA1	chr8:52807487-52807918	HepG2	liver:	n/a	n/a
12	JUND	chr8:52807274-52807867	K562	blood:	n/a	n/a
13	FOXA2	chr8:52807524-52807942	A549	lung:	n/a	n/a

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:52775017..52777549-chr8:52806193..52807978,2	MCF-7	breast:
2	chr8:52807403..52809441-chr8:52809988..52811800,2	MCF-7	breast:
3	chr8:52762297..52765279-chr8:52806438..52808911,2	K562	blood:
4	chr8:52805769..52807852-chr8:52829982..52831836,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000228801	TF binding region
ENSG00000168300	Chromatin interaction

Extended variants
information (count: 164 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:160)

rs_ID	r²[population]
rs10086351	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10086504	0.87[JPT][hapmap]
rs10095651	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10095739	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10096585	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10096943	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10097328	0.87[JPT][hapmap]
rs10110304	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[YRI][hapmap];0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10112086	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1022315	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1022316	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1022317	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10435632	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10464943	0.88[ASN][1000 genomes]
rs10504128	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10504132	0.86[JPT][hapmap]
rs1059041	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1073371	0.89[ASN][1000 genomes]
rs1073372	0.89[ASN][1000 genomes]
rs1078888	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10958298	0.89[ASN][1000 genomes]
rs10958299	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10958302	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10958303	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11775601	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11777316	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11777386	0.96[ASN][1000 genomes]
rs11777885	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11782696	0.80[ASN][1000 genomes]
rs11782730	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11784921	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11786126	0.89[ASN][1000 genomes]
rs12334986	0.88[ASN][1000 genomes]
rs12546934	0.89[ASN][1000 genomes]
rs12675156	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12675404	1.00[ASN][1000 genomes]
rs12676361	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12678479	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12680771	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12680958	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12681673	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12681867	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12682564	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13250860	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13250922	0.86[ASN][1000 genomes]
rs13252580	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13254066	0.85[ASN][1000 genomes]
rs13256408	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13257067	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13257291	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13257720	0.89[ASN][1000 genomes]
rs13258269	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13261243	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13264242	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13265029	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13266326	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13267846	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13268128	0.89[ASN][1000 genomes]
rs13268907	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13268938	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13269881	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13271572	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13272178	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13272467	0.93[ASN][1000 genomes]
rs13274160	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13275045	0.87[ASN][1000 genomes]
rs13275235	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13277735	0.86[ASN][1000 genomes]
rs13280391	0.89[ASN][1000 genomes]
rs13280413	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13280471	0.80[ASN][1000 genomes]
rs13281179	0.87[JPT][hapmap]
rs13340640	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1517304	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1517305	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16916810	0.89[ASN][1000 genomes]
rs16916843	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16916878	0.83[JPT][hapmap]
rs1914370	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2395825	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2395857	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28671127	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3763547	1.00[CHB][hapmap];0.95[JPT][hapmap];0.98[ASN][1000 genomes]
rs3824266	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4259408	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4291261	0.89[ASN][1000 genomes]
rs4294173	0.80[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4313145	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4324911	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4330683	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4352840	0.89[ASN][1000 genomes]
rs4361755	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs4395889	0.91[ASN][1000 genomes]
rs4401852	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4425747	0.86[ASN][1000 genomes]
rs4442135	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4487755	0.89[ASN][1000 genomes]
rs4570148	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4584139	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4587320	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4596648	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4612332	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs4615560	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4618684	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4634632	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4642637	0.89[ASN][1000 genomes]
rs4873206	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4873207	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4873603	0.89[ASN][1000 genomes]
rs4873604	0.89[ASN][1000 genomes]
rs4873606	0.88[ASN][1000 genomes]
rs4873608	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4873610	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4873613	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4873616	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4873617	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5002416	0.80[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs5003717	0.84[ASN][1000 genomes]
rs6983163	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6986984	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6990552	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6996898	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6999031	0.89[ASN][1000 genomes]
rs6999321	0.84[ASN][1000 genomes]
rs7000485	0.82[ASN][1000 genomes]
rs7000493	0.82[ASN][1000 genomes]
rs7008057	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7010217	0.86[JPT][hapmap]
rs7011046	0.80[CEU][hapmap];0.87[JPT][hapmap]
rs7011225	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7012360	0.89[ASN][1000 genomes]
rs7013587	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7014075	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7017450	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs718250	0.89[ASN][1000 genomes]
rs7460311	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7463120	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7464192	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7465225	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs753540	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs756484	0.89[ASN][1000 genomes]
rs7818832	0.87[ASN][1000 genomes]
rs7829408	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7833777	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7838816	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs882492	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs884580	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs925761	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs925763	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9298463	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9298464	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9298465	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9298466	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9298467	1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[ASN][1000 genomes]
rs9643466	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9643790	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9643791	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9643792	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9643793	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs998709	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817615	chr8:52252405-53023384	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1018429	chr8:52411443-52878946	Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv1034856	chr8:52411443-52886765	Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	nsv831316	chr8:52660353-52842928	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs950687	PCMTD1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:52771800-52810800	Weak transcription	Esophagus	oesophagus
2	chr8:52779400-52809000	Weak transcription	Fetal Kidney	kidney
3	chr8:52782200-52809600	Weak transcription	Aorta	Aorta
4	chr8:52797400-52809000	Weak transcription	HMEC	breast
5	chr8:52797400-52809600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr8:52797400-52809600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr8:52797400-52810800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr8:52798000-52810800	Weak transcription	Spleen	Spleen
9	chr8:52798800-52808800	Weak transcription	Fetal Brain Female	brain
10	chr8:52799600-52809800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr8:52800000-52809000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr8:52801600-52810200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr8:52801800-52809600	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr8:52801800-52810800	Weak transcription	Gastric	stomach
15	chr8:52802400-52810000	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr8:52803400-52809800	Weak transcription	Colonic Mucosa	Colon
17	chr8:52803400-52810200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr8:52803600-52808000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr8:52804000-52809200	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr8:52804000-52809400	Weak transcription	Fetal Muscle Leg	muscle
21	chr8:52804000-52809600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr8:52804000-52809600	Weak transcription	Fetal Intestine Large	intestine
23	chr8:52804000-52809600	Weak transcription	Right Atrium	heart
24	chr8:52804200-52808000	Weak transcription	Primary T cells fromperipheralblood	blood
25	chr8:52804200-52808600	Weak transcription	Pancreas	Pancrea
26	chr8:52804200-52809800	Weak transcription	Left Ventricle	heart
27	chr8:52804200-52810400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr8:52804200-52810400	Weak transcription	Lung	lung
29	chr8:52805000-52809200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr8:52805200-52809800	Weak transcription	Psoas Muscle	Psoas
31	chr8:52805800-52810000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
32	chr8:52806000-52807800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr8:52806000-52807800	Enhancers	Rectal Mucosa Donor 31	rectum
34	chr8:52806000-52808000	Strong transcription	HUES48 Cell Line	embryonic stem cell
35	chr8:52806200-52808400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
36	chr8:52806200-52808400	Enhancers	Skeletal Muscle Female	skeletal muscle
37	chr8:52806200-52809600	Enhancers	HepG2	liver
38	chr8:52806200-52810000	Enhancers	Primary neutrophils fromperipheralblood	blood
39	chr8:52806400-52807800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr8:52806400-52807800	Enhancers	Primary T killer memory cells from peripheral blood	blood
41	chr8:52806400-52807800	Enhancers	Adipose Nuclei	Adipose
42	chr8:52806400-52807800	Genic enhancers	Brain Hippocampus Middle	brain
43	chr8:52806400-52807800	Enhancers	Brain Substantia Nigra	brain
44	chr8:52806400-52807800	Enhancers	Stomach Smooth Muscle	stomach
45	chr8:52806400-52808000	Enhancers	Brain Anterior Caudate	brain
46	chr8:52806400-52808000	Enhancers	Brain Germinal Matrix	brain
47	chr8:52806400-52808000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
48	chr8:52806400-52808000	Strong transcription	NHEK	skin
49	chr8:52806400-52808200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
50	chr8:52806400-52808200	Enhancers	Primary T helper cells PMA-I stimulated	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links