Variant report

Variant	rs9508572
Chromosome Location	chr13:30433267-30433268
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1323931	0.82[CEU][hapmap]
rs3818368	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs9508553	0.82[CEU][hapmap]
rs9551751	0.82[CEU][hapmap];0.81[EUR][1000 genomes]
rs9551755	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3520592	chr13:30243601-30648554	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	esv3520593	chr13:30243601-30648554	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30427200-30434000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr13:30427400-30434200	Weak transcription	HSMM	muscle
3	chr13:30427600-30435600	Weak transcription	A549	lung
4	chr13:30430000-30435400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr13:30430200-30435400	Weak transcription	Placenta	Placenta
6	chr13:30430800-30436600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr13:30432000-30435600	Enhancers	Osteobl	bone
8	chr13:30432200-30434200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr13:30432400-30433800	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr13:30432600-30435400	Weak transcription	NHEK	skin
11	chr13:30432600-30436400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr13:30432800-30434200	Weak transcription	NHLF	lung
13	chr13:30433000-30434800	Enhancers	Primary neutrophils fromperipheralblood	blood
14	chr13:30433000-30435000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr13:30433200-30433600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr13:30433200-30435400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr13:30433200-30435400	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr13:30433200-30435400	Weak transcription	NHDF-Ad	bronchial

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links