Variant report

Variant	rs9515107
Chromosome Location	chr13:110382842-110382843
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1004409	0.89[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1550041	0.89[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs61962673	0.89[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs913950	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9555630	0.89[ASN][1000 genomes]
rs9559633	0.89[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs9559636	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044855	chr13:110301572-110408608	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv826788	chr13:110381750-110469062	Flanking Bivalent TSS/Enh Genic enhancers Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110378400-110383000	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr13:110378400-110386200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr13:110378600-110383600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr13:110381800-110383400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr13:110381800-110383600	Enhancers	Primary hematopoietic stem cells	blood
6	chr13:110381800-110383800	Weak transcription	Fetal Muscle Leg	muscle
7	chr13:110382000-110383600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr13:110382000-110386000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr13:110382200-110383200	Weak transcription	Ovary	ovary
10	chr13:110382200-110384600	Active TSS	Primary B cells from cord blood	blood
11	chr13:110382200-110384800	Active TSS	Dnd41	blood
12	chr13:110382200-110385400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr13:110382200-110388800	Weak transcription	Fetal Heart	heart
14	chr13:110382400-110384600	Active TSS	Primary neutrophils fromperipheralblood	blood
15	chr13:110382600-110383600	Weak transcription	Fetal Thymus	thymus
16	chr13:110382600-110389800	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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