Variant report

Variant	rs9516073
Chromosome Location	chr13:93052008-93052009
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1023012	0.86[AMR][1000 genomes]
rs12877337	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17434593	0.88[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]
rs2209834	0.84[CEU][hapmap];0.83[TSI][hapmap];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2225157	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4773681	0.81[CEU][hapmap];0.85[AMR][1000 genomes]
rs7317334	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7334105	0.92[CEU][hapmap];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7336824	0.87[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7985054	0.86[AMR][1000 genomes]
rs8000039	0.87[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]
rs9516076	0.90[ASW][hapmap];0.83[CEU][hapmap];0.92[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.93[MEX][hapmap];0.98[MKK][hapmap];1.00[YRI][hapmap]
rs9523670	0.90[ASW][hapmap];0.88[CEU][hapmap];0.92[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.93[MEX][hapmap];0.98[MKK][hapmap];1.00[YRI][hapmap]
rs9523671	0.95[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2756005	chr13:92584199-93080799	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1037815	chr13:92959102-93052008	Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv832680	chr13:93021114-93181489	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:93049600-93060200	Weak transcription	Fetal Intestine Small	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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