Variant report

Variant	rs9516226
Chromosome Location	chr13:94019834-94019835
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:94019514..94020054-chr13:108501981..108502497,2	K562	blood:
2	chr13:94010069..94012294-chr13:94018133..94019897,2	K562	blood:
3	chr13:94018136..94020866-chr13:94022567..94024673,2	K562	blood:
4	chr13:94003388..94006279-chr13:94018446..94020737,2	K562	blood:
5	chr13:94004779..94008809-chr13:94017437..94020691,3	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1323971	0.84[ASN][1000 genomes]
rs1323974	0.87[EUR][1000 genomes]
rs1323984	0.82[EUR][1000 genomes]
rs1323986	0.84[EUR][1000 genomes]
rs1408210	0.86[EUR][1000 genomes]
rs16948663	0.85[EUR][1000 genomes]
rs4771874	0.83[ASN][1000 genomes]
rs66460753	0.84[ASN][1000 genomes]
rs7982050	0.85[EUR][1000 genomes]
rs7985067	0.85[EUR][1000 genomes]
rs7987095	0.85[EUR][1000 genomes]
rs7988183	0.85[EUR][1000 genomes]
rs7990402	0.84[EUR][1000 genomes]
rs7999616	0.81[EUR][1000 genomes]
rs8002965	0.85[EUR][1000 genomes]
rs9301871	0.87[EUR][1000 genomes]
rs9301872	0.87[EUR][1000 genomes]
rs9301873	0.87[EUR][1000 genomes]
rs9301876	0.84[ASN][1000 genomes]
rs9516222	0.83[EUR][1000 genomes]
rs9524020	0.88[EUR][1000 genomes]
rs9524022	0.88[EUR][1000 genomes]
rs9524026	0.84[ASN][1000 genomes]
rs9524027	0.84[ASN][1000 genomes]
rs9556285	0.87[EUR][1000 genomes]
rs995810	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869070	chr13:93347616-94286933	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1053035	chr13:93842576-94229732	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv541880	chr13:93842576-94229732	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv900919	chr13:93957816-94030693	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv530636	chr13:93997311-94281707	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:94008800-94042400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr13:94009400-94040400	Weak transcription	Aorta	Aorta
3	chr13:94014200-94038800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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