Variant report

Variant	rs9516826
Chromosome Location	chr13:87995701-87995702
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SLITRK5-14	chr13:87995599-87995765	NONHSAT034585

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1576563	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4038018	0.83[ASN][1000 genomes]
rs4076203	0.93[ASN][1000 genomes]
rs4077620	0.90[ASN][1000 genomes]
rs4319609	0.85[ASN][1000 genomes]
rs4460926	0.89[ASN][1000 genomes]
rs4463950	0.90[ASN][1000 genomes]
rs4514531	0.88[ASN][1000 genomes]
rs4590995	0.92[ASN][1000 genomes]
rs4771960	0.91[ASN][1000 genomes]
rs7321793	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7330410	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7330976	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7982994	0.88[ASN][1000 genomes]
rs7984154	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7985536	0.93[ASN][1000 genomes]
rs7999578	0.82[ASN][1000 genomes]
rs9300394	0.90[ASN][1000 genomes]
rs9300403	0.85[ASN][1000 genomes]
rs9513234	0.87[ASN][1000 genomes]
rs9513241	0.83[ASN][1000 genomes]
rs9516827	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9516917	0.83[ASN][1000 genomes]
rs9554385	0.93[ASN][1000 genomes]
rs9554395	0.81[ASN][1000 genomes]
rs9556665	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9556681	0.94[ASN][1000 genomes]
rs9556691	0.90[ASN][1000 genomes]
rs9556693	0.88[ASN][1000 genomes]
rs9556694	0.93[ASN][1000 genomes]
rs9556699	0.87[ASN][1000 genomes]
rs9556719	0.81[ASN][1000 genomes]
rs9584474	0.82[ASN][1000 genomes]
rs9584513	0.89[ASN][1000 genomes]
rs9584516	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045687	chr13:87822969-88114685	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv541860	chr13:87822969-88114685	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv930999	chr13:87831662-88143592	Strong transcription ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1043448	chr13:87835419-88140970	Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv916254	chr13:87856806-88107725	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1044185	chr13:87949735-88096644	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv832672	chr13:87994963-88167897	Flanking Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:87982200-87998600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr13:87993800-88005800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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