Variant report

Variant	rs9516920
Chromosome Location	chr13:98035692-98035693
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs1590800	1.00[AFR][1000 genomes]
rs2389907	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832694	chr13:97930561-98137882	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv1038798	chr13:98008467-98068130	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97995400-98050200	Weak transcription	Small Intestine	intestine
2	chr13:98002400-98039600	Weak transcription	Spleen	Spleen
3	chr13:98015200-98036600	Weak transcription	Fetal Heart	heart
4	chr13:98020000-98045600	Weak transcription	Hela-S3	cervix
5	chr13:98020200-98046000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr13:98020400-98048000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr13:98022000-98036600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr13:98022000-98038600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr13:98022000-98039000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr13:98022000-98043400	Weak transcription	Stomach Mucosa	stomach
11	chr13:98022000-98045600	Weak transcription	Colonic Mucosa	Colon
12	chr13:98022000-98048000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr13:98022200-98037200	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr13:98022200-98038200	Weak transcription	Dnd41	blood
15	chr13:98022200-98038600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr13:98022200-98042600	Weak transcription	Primary T helper cells PMA-I stimulated	--
17	chr13:98022600-98043800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr13:98023400-98041600	Strong transcription	Liver	Liver
19	chr13:98023600-98045400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
20	chr13:98024000-98044600	Weak transcription	GM12878-XiMat	blood
21	chr13:98025000-98039200	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr13:98026400-98045200	Weak transcription	Fetal Brain Male	brain
23	chr13:98026800-98041200	Strong transcription	HepG2	liver
24	chr13:98027200-98040400	Strong transcription	Fetal Lung	lung
25	chr13:98027800-98037200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr13:98027800-98043800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr13:98027800-98044000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
28	chr13:98027800-98048000	Weak transcription	K562	blood
29	chr13:98028000-98038400	Weak transcription	Fetal Thymus	thymus
30	chr13:98028000-98038400	Weak transcription	NHEK	skin
31	chr13:98028000-98056400	Weak transcription	Psoas Muscle	Psoas
32	chr13:98028200-98036600	Weak transcription	Gastric	stomach
33	chr13:98028200-98038400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
34	chr13:98028200-98046200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr13:98028200-98048000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr13:98028200-98048000	Weak transcription	Fetal Kidney	kidney
37	chr13:98028400-98036600	Weak transcription	Aorta	Aorta
38	chr13:98028400-98036800	Weak transcription	Primary hematopoietic stem cells	blood
39	chr13:98028400-98037200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr13:98028400-98037200	Weak transcription	HSMMtube	muscle
41	chr13:98028400-98038200	Weak transcription	Pancreas	Pancrea
42	chr13:98028400-98038800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
43	chr13:98028400-98041000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
44	chr13:98028400-98047600	Weak transcription	HMEC	breast
45	chr13:98028600-98036600	Weak transcription	Right Ventricle	heart
46	chr13:98028600-98046800	Weak transcription	A549	lung
47	chr13:98028800-98036600	Weak transcription	Rectal Smooth Muscle	rectum
48	chr13:98028800-98036800	Weak transcription	Fetal Intestine Small	intestine
49	chr13:98028800-98037000	Weak transcription	Skeletal Muscle Female	skeletal muscle
50	chr13:98029200-98036600	Weak transcription	Colon Smooth Muscle	Colon

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