Variant report

Variant	rs9521508
Chromosome Location	chr13:110420832-110420833
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1414316	0.81[EUR][1000 genomes]
rs1967911	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2117455	0.81[EUR][1000 genomes]
rs2289046	0.90[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap]
rs2289047	0.90[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap]
rs35612086	0.81[EUR][1000 genomes]
rs36092351	0.81[EUR][1000 genomes]
rs4547213	0.95[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4771648	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4771649	0.81[EUR][1000 genomes]
rs58120907	0.86[EUR][1000 genomes]
rs874016	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9515119	0.89[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap]
rs9521510	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9521517	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv826788	chr13:110381750-110469062	Flanking Bivalent TSS/Enh Genic enhancers Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv826789	chr13:110387268-110473524	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	nsv526943	chr13:110393477-110421884	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv826790	chr13:110395165-110463032	Weak transcription Genic enhancers Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
5	nsv826791	chr13:110397733-110462553	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
6	nsv826792	chr13:110398678-110462209	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
7	nsv1047427	chr13:110412864-110446417	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
8	esv3520397	chr13:110416151-110421049	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	esv3520408	chr13:110416151-110421049	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv9108	chr13:110417229-110421996	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110397000-110428800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr13:110397200-110430400	Weak transcription	NHLF	lung
3	chr13:110401800-110430800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr13:110403200-110430600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr13:110406200-110429400	Weak transcription	Primary B cells from cord blood	blood
6	chr13:110407400-110423400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr13:110408600-110421600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr13:110408600-110422800	Weak transcription	Duodenum Mucosa	Duodenum
9	chr13:110408600-110423800	Weak transcription	Placenta	Placenta
10	chr13:110408600-110424400	Weak transcription	Spleen	Spleen
11	chr13:110408600-110430400	Weak transcription	Colonic Mucosa	Colon
12	chr13:110408800-110421400	Weak transcription	Fetal Intestine Large	intestine
13	chr13:110408800-110421800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr13:110408800-110422800	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr13:110408800-110423600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr13:110409000-110422600	Weak transcription	Fetal Lung	lung
17	chr13:110409000-110431200	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr13:110409200-110422200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr13:110409200-110422600	Weak transcription	Primary hematopoietic stem cells	blood
20	chr13:110409200-110423000	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr13:110409400-110429800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr13:110409400-110430200	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr13:110411600-110422600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr13:110411800-110421800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr13:110412200-110422400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr13:110413400-110430400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr13:110413600-110430800	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr13:110414000-110424400	Weak transcription	Pancreatic Islets	Pancreatic Islet
29	chr13:110414400-110428800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr13:110415000-110428800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr13:110415400-110421000	Weak transcription	Aorta	Aorta
32	chr13:110416000-110430800	Weak transcription	Fetal Kidney	kidney
33	chr13:110417000-110432400	Weak transcription	H1 Cell Line	embryonic stem cell
34	chr13:110417200-110424600	Weak transcription	HUES48 Cell Line	embryonic stem cell
35	chr13:110417200-110430400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr13:110417200-110431600	Weak transcription	Fetal Muscle Leg	muscle
37	chr13:110417400-110422600	Weak transcription	NHDF-Ad	bronchial
38	chr13:110417400-110425600	Weak transcription	NH-A	brain
39	chr13:110417400-110429400	Weak transcription	Small Intestine	intestine
40	chr13:110417400-110430200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr13:110417600-110422800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr13:110417600-110423000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr13:110417600-110424200	Weak transcription	Brain Germinal Matrix	brain
44	chr13:110417600-110430400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr13:110417600-110430400	Weak transcription	Thymus	Thymus
46	chr13:110417600-110430600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
47	chr13:110417800-110421000	Weak transcription	Primary T helper cells PMA-I stimulated	--
48	chr13:110417800-110421600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr13:110417800-110421600	Weak transcription	Fetal Stomach	stomach
50	chr13:110417800-110421600	Weak transcription	NHEK	skin

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