Variant report

Variant	rs9521671
Chromosome Location	chr13:110909064-110909065
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12020579	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35716322	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9515176	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9515177	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9521672	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9521673	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9634591	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052147	chr13:110765635-110917782	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv1038914	chr13:110860219-111190104	Weak transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110882600-110913600	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr13:110884800-110914000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr13:110894600-110912200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr13:110897800-110914200	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr13:110897800-110914800	Weak transcription	Stomach Mucosa	stomach
6	chr13:110900000-110916200	Weak transcription	A549	lung
7	chr13:110900400-110913600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr13:110900600-110913600	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr13:110901000-110913600	Weak transcription	Fetal Intestine Large	intestine
10	chr13:110901000-110919400	Weak transcription	Fetal Brain Male	brain
11	chr13:110903000-110914000	Weak transcription	Fetal Intestine Small	intestine
12	chr13:110903800-110911200	Weak transcription	HMEC	breast
13	chr13:110904200-110909200	Weak transcription	Osteobl	bone
14	chr13:110904200-110910000	Weak transcription	HUVEC	blood vessel
15	chr13:110904200-110913600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr13:110904200-110914200	Weak transcription	Esophagus	oesophagus
17	chr13:110904200-110918200	Weak transcription	Pancreas	Pancrea
18	chr13:110904400-110909200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr13:110906400-110909200	Enhancers	Placenta	Placenta
20	chr13:110906600-110910200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
21	chr13:110906800-110912200	Weak transcription	Aorta	Aorta
22	chr13:110906800-110914200	Weak transcription	Fetal Lung	lung
23	chr13:110906800-110915000	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr13:110907000-110909600	Weak transcription	Fetal Heart	heart
25	chr13:110907000-110911200	Weak transcription	HSMM	muscle
26	chr13:110907000-110911400	Weak transcription	HSMMtube	muscle
27	chr13:110907200-110911000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr13:110907400-110913600	Weak transcription	Fetal Kidney	kidney
29	chr13:110907600-110909400	Weak transcription	NH-A	brain
30	chr13:110907600-110911000	Weak transcription	Muscle Satellite Cultured Cells	--
31	chr13:110907600-110911200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr13:110907800-110909400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr13:110907800-110912000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr13:110907800-110912200	Weak transcription	Fetal Muscle Leg	muscle
35	chr13:110907800-110913400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr13:110907800-110913400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr13:110907800-110913600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr13:110908200-110910000	Enhancers	Colon Smooth Muscle	Colon
39	chr13:110908400-110909200	Enhancers	Right Atrium	heart
40	chr13:110908400-110910000	Enhancers	NHEK	skin
41	chr13:110908400-110910000	Enhancers	NHLF	lung
42	chr13:110908400-110910200	Enhancers	Fetal Stomach	stomach
43	chr13:110908600-110909200	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr13:110908600-110909200	Enhancers	Duodenum Smooth Muscle	Duodenum
45	chr13:110908600-110909200	Enhancers	Fetal Muscle Trunk	muscle
46	chr13:110908600-110909200	Genic enhancers	Left Ventricle	heart
47	chr13:110908600-110909200	Flanking Active TSS	Rectal Smooth Muscle	rectum
48	chr13:110908600-110909200	Enhancers	Spleen	Spleen
49	chr13:110908600-110909400	Enhancers	Right Ventricle	heart
50	chr13:110908600-110909600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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