Variant report
| Variant | rs9523681 |
|---|---|
| Chromosome Location | chr13:93140957-93140958 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:8)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:8 , 50 per page) page:
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| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | GATA3 | chr13:93140473-93140957 | SK-N-SH | brain: | n/a | chr13:93140902-93140912 |
| 2 | GATA2 | chr13:93140548-93141037 | SH-SY5Y | brain: | n/a | chr13:93140902-93140912 |
| 3 | NFYB | chr13:93140839-93141039 | GM12878 | blood: | n/a | n/a |
| 4 | GATA3 | chr13:93140385-93141028 | SH-SY5Y | brain: | n/a | chr13:93140902-93140912 |
| 5 | POLR2A | chr13:93140528-93141202 | SK-N-MC | brain: | n/a | n/a |
| 6 | POLR2A | chr13:93140633-93141209 | H1-neurons | neurons: | n/a | n/a |
| 7 | POLR2A | chr13:93140675-93141096 | H1-neurons | neurons: | n/a | n/a |
| 8 | EP300 | chr13:93140063-93141247 | SK-N-SH | brain: | n/a | chr13:93140900-93140914 |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| MIR548AS | TF binding region |
rSNPs within LD-proxies of this variant (count:14)
| rs_ID | r2[population] |
|---|---|
| rs17188453 | 1.00[CHB][hapmap];0.88[JPT][hapmap] |
| rs17267193 | 1.00[CHB][hapmap] |
| rs2149062 | 1.00[CHB][hapmap];0.88[JPT][hapmap] |
| rs2149063 | 1.00[CHB][hapmap];0.88[JPT][hapmap];0.97[ASN][1000 genomes] |
| rs2483515 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs2780741 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs7331009 | 1.00[CHB][hapmap];0.90[JPT][hapmap];0.85[YRI][hapmap];0.88[AFR][1000 genomes];0.97[ASN][1000 genomes] |
| rs9301819 | 1.00[CHB][hapmap] |
| rs9523680 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9523685 | 0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap] |
| rs9523688 | 0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9523699 | 0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs9561072 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs993486 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.90[AFR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv832680 | chr13:93021114-93181489 | Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv471168 | chr13:93138577-93208593 | Enhancers Weak transcription Genic enhancers ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNAmiRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv900904 | chr13:93138577-93208593 | Enhancers Weak transcription ZNF genes & repeats Genic enhancers | TF binding regionChromatin interactive regionlncRNAmiRNA | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv900905 | chr13:93138577-93211339 | Enhancers Weak transcription Genic enhancers ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNAmiRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:93138400-93142600 | Weak transcription | Brain Germinal Matrix | brain |
