Variant report

Variant	rs9523808
Chromosome Location	chr13:93458421-93458422
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs9516132	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9516133	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9516134	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9516137	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9516139	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9523809	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9523811	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9523812	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9523815	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9523816	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9523817	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9523824	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869070	chr13:93347616-94286933	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv456072	chr13:93419362-93506864	Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv562746	chr13:93419362-93506864	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:93457800-93458600	Active TSS	Liver	Liver
2	chr13:93458000-93458800	Active TSS	Colon Smooth Muscle	Colon
3	chr13:93458000-93459200	Flanking Active TSS	Dnd41	blood
4	chr13:93458200-93458600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr13:93458200-93458600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr13:93458200-93458600	Active TSS	Primary T helper cells fromperipheralblood	blood
7	chr13:93458200-93458600	Active TSS	Brain Angular Gyrus	brain
8	chr13:93458200-93458600	Active TSS	Brain Inferior Temporal Lobe	brain
9	chr13:93458200-93458600	Active TSS	HSMMtube	muscle
10	chr13:93458200-93458800	Active TSS	Primary hematopoietic stem cells	blood
11	chr13:93458200-93458800	Active TSS	Primary T helper naive cells fromperipheralblood	blood
12	chr13:93458200-93458800	Active TSS	Primary T helper cells PMA-I stimulated	--
13	chr13:93458200-93458800	Active TSS	Primary T regulatory cells fromperipheralblood	blood
14	chr13:93458200-93458800	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr13:93458200-93458800	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr13:93458200-93458800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr13:93458200-93458800	Active TSS	Aorta	Aorta
18	chr13:93458200-93458800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
19	chr13:93458200-93458800	Active TSS	Duodenum Mucosa	Duodenum
20	chr13:93458200-93458800	Active TSS	Fetal Adrenal Gland	Adrenal Gland
21	chr13:93458200-93458800	Active TSS	Ovary	ovary
22	chr13:93458200-93458800	Active TSS	Right Atrium	heart
23	chr13:93458200-93458800	Active TSS	NHLF	lung
24	chr13:93458200-93459000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr13:93458200-93459000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr13:93458200-93459000	Flanking Active TSS	Adipose Nuclei	Adipose
27	chr13:93458200-93459000	Active TSS	Brain Hippocampus Middle	brain
28	chr13:93458200-93459000	Active TSS	Rectal Smooth Muscle	rectum
29	chr13:93458200-93459000	Active TSS	Stomach Smooth Muscle	stomach
30	chr13:93458200-93459000	Active TSS	NHEK	skin
31	chr13:93458200-93459200	Active TSS	Duodenum Smooth Muscle	Duodenum
32	chr13:93458400-93458600	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr13:93458400-93458600	Active TSS	Muscle Satellite Cultured Cells	--
34	chr13:93458400-93458800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr13:93458400-93458800	Active TSS	Breast Myoepithelial Primary Cells	Breast
36	chr13:93458400-93458800	Active TSS	Primary T cells fromperipheralblood	blood
37	chr13:93458400-93458800	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
38	chr13:93458400-93458800	Active TSS	Brain Cingulate Gyrus	brain
39	chr13:93458400-93458800	Active TSS	Pancreatic Islets	Pancreatic Islet
40	chr13:93458400-93458800	Active TSS	Placenta	Placenta
41	chr13:93458400-93458800	Active TSS	Rectal Mucosa Donor 29	rectum
42	chr13:93458400-93458800	Active TSS	Stomach Mucosa	stomach
43	chr13:93458400-93458800	Active TSS	A549	lung
44	chr13:93458400-93458800	Active TSS	HepG2	liver
45	chr13:93458400-93458800	Active TSS	HSMM	muscle
46	chr13:93458400-93458800	Active TSS	Monocytes-CD14+_RO01746	blood
47	chr13:93458400-93458800	Active TSS	NHDF-Ad	bronchial
48	chr13:93458400-93458800	Active TSS	Osteobl	bone
49	chr13:93458400-93459000	Active TSS	Primary T helper naive cells from peripheral blood	blood
50	chr13:93458400-93459000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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