Variant report

Variant	rs9524742
Chromosome Location	chr13:95650055-95650056
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs1013388	0.80[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs10508010	0.90[EUR][1000 genomes]
rs11618778	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1925858	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1925860	0.94[EUR][1000 genomes]
rs1925861	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1925862	0.94[EUR][1000 genomes]
rs1925863	0.94[EUR][1000 genomes]
rs1998803	0.94[EUR][1000 genomes]
rs1998804	0.94[EUR][1000 genomes]
rs2389181	0.82[EUR][1000 genomes]
rs56193309	0.88[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs59003216	0.80[ASN][1000 genomes]
rs61965530	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61965531	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61965532	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61965533	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61965534	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61965555	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6492761	0.94[EUR][1000 genomes]
rs726482	0.94[EUR][1000 genomes]
rs766606	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7997804	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7997815	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9302035	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9302036	0.89[ASN][1000 genomes]
rs9516500	0.90[EUR][1000 genomes]
rs9516506	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9524716	0.89[EUR][1000 genomes]
rs9524717	0.89[EUR][1000 genomes]
rs9524719	0.90[EUR][1000 genomes]
rs9524722	0.80[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs9524725	0.81[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs9524732	0.86[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs9524741	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9556445	0.88[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs9556447	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9556449	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9561742	0.88[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs9561743	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9561744	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9561745	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9561746	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9561749	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9561750	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9561751	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9561752	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9561753	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9561754	0.86[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs9561757	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9561758	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9561759	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832688	chr13:95633193-95780198	Flanking Bivalent TSS/Enh Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:95645400-95650600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr13:95646600-95654400	Weak transcription	Osteobl	bone
3	chr13:95648400-95650800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
4	chr13:95648400-95650800	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr13:95648400-95650800	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr13:95648400-95651000	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr13:95648800-95650200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr13:95648800-95650200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr13:95649000-95650400	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr13:95649200-95650200	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr13:95649200-95655600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr13:95649400-95650600	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr13:95649800-95651000	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr13:95649800-95651000	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr13:95649800-95651000	Enhancers	iPS-15b Cell Line	embryonic stem cell

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